Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
TNFRSF4P43489 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.6□□□□□ -1.83
TNFRSF4P43489 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
TNFRSF4P43489 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
TNFRSF4P43489 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC018529.3-201ENST00000624212 2254 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
TNFRSF4P43489 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
TNFRSF4P43489 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
TNFRSF4P43489 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
TNFRSF4P43489 SNORD74.4-201ENST00000364129 80 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 RNU6-224P-201ENST00000384055 107 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 U3.19-201ENST00000390893 196 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 BOLA3P4-201ENST00000418151 400 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC005326.1-201ENST00000429197 123 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 MTCO1P3-201ENST00000429327 192 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC004022.1-201ENST00000447766 1066 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC078918.1-201ENST00000498515 228 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC004069.2-201ENST00000505438 1114 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC023141.12-201ENST00000512399 199 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 FTH1P9-201ENST00000513251 355 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 RNU6-276P-201ENST00000516114 96 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 RN7SKP57-201ENST00000517248 293 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC021451.1-201ENST00000523498 1129 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AP003385.6-201ENST00000531603 374 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC010928.3-201ENST00000587712 541 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC245884.10-201ENST00000597355 337 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 AL022067.1-201ENST00000602426 454 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC096947.1-201ENST00000603233 470 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 BRDTP1-201ENST00000605735 677 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 U4.6-201ENST00000621618 127 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AL157770.1-201ENST00000623049 439 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC090772.4-201ENST00000623599 362 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 MFSD8-245ENST00000641743 948 ntBASIC3.59□□□□□ -1.83
TNFRSF4P43489 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.59□□□□□ -1.83
TNFRSF4P43489 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
TNFRSF4P43489 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.84
TNFRSF4P43489 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC068254.2-201ENST00000623938 3577 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC130650.2-201ENST00000618736 2403 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 RNU6-492P-201ENST00000363035 104 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 RNU6-707P-201ENST00000364647 95 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 Y_RNA.493-201ENST00000384422 102 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 MIR93-201ENST00000385024 80 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC009237.5-201ENST00000414271 501 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC244098.2-201ENST00000422068 99 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 MTCO3P1-205ENST00000422088 832 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC073587.1-201ENST00000447093 876 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 COX6CP18-201ENST00000448769 222 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 SYPL1P1-201ENST00000473622 768 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC069528.1-202ENST00000482888 637 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 NCOR1P1-202ENST00000486162 291 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC084024.2-201ENST00000503480 791 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TNFRSF4P43489 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC069431.2-201ENST00000604149 1099 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AL139286.1-201ENST00000604465 483 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 255.6 ms