Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
COL6A1P12109 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A1P12109 AL136964.1-201ENST00000622038 2990 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A1P12109 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A1P12109 RNU6-216P-201ENST00000363282 104 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
COL6A1P12109 RNA5SP187-201ENST00000384400 119 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 MIR124-3-201ENST00000384866 87 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 MT-TL1-201ENST00000386347 75 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC5.27□□□□□ -1.57
COL6A1P12109 GSTA9P-201ENST00000406231 611 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 U3.32-201ENST00000408116 212 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 RN7SKP267-201ENST00000410381 285 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 RNU6-272P-201ENST00000411028 104 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 NUP35P2-201ENST00000416748 943 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 C1DP2-201ENST00000418167 426 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A1P12109 ELOCP14-201ENST00000428070 331 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 RPS29P17-201ENST00000430795 166 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 ELOCP7-201ENST00000439968 331 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A1P12109 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.27□□□□□ -1.57
COL6A1P12109 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC5.27□□□□□ -1.57
COL6A1P12109 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 RN7SL517P-201ENST00000462240 305 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AC069439.1-201ENST00000494739 167 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.27□□□□□ -1.57
COL6A1P12109 SNORA18.6-201ENST00000516792 115 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A1P12109 DEFB131D-201ENST00000526803 184 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 RAB11AP2-201ENST00000545905 639 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AC125257.1-201ENST00000560400 2930 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AL133457.1-201ENST00000564251 987 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.27□□□□□ -1.57
COL6A1P12109 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A1P12109 MIR4444-1-201ENST00000581696 74 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 MIR4444-2-201ENST00000584390 74 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AL049634.3-201ENST00000604968 457 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 UBE2Q2P2-203ENST00000613592 761 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AC136475.10-201ENST00000620253 385 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AP005019.3-201ENST00000620418 560 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.27□□□□□ -1.57
COL6A1P12109 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC5.27□□□□□ -1.57
COL6A1P12109 AL596275.2-204ENST00000641628 552 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AL596275.2-206ENST00000641957 626 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 OR14L1P-202ENST00000641545 3009 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A1P12109 TLK1P1-201ENST00000456760 2440 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A1P12109 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.27□□□□□ -1.57
COL6A1P12109 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A1P12109 ERCC6-202ENST00000374127 1782 ntBASIC5.27□□□□□ -1.57
COL6A1P12109 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A1P12109 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A1P12109 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A1P12109 AC025031.4-201ENST00000621248 3271 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A1P12109 ZFRP1-201ENST00000457579 2970 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A1P12109 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A1P12109 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.26□□□□□ -1.57
COL6A1P12109 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A1P12109 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A1P12109 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A1P12109 ZYG11AP1-201ENST00000430329 837 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A1P12109 RPL34P6-201ENST00000432390 345 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A1P12109 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A1P12109 SLC31A1P1-201ENST00000451221 567 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AC091564.1-201ENST00000464563 479 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 S100A11P1-201ENST00000477525 312 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AC090686.1-201ENST00000481577 749 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 RPS27P23-201ENST00000487608 251 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 ENPP7P11-201ENST00000505915 627 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 RNU6-583P-201ENST00000516012 92 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 RNU6-875P-201ENST00000516488 106 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 SNORA67.7-201ENST00000516664 135 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A1P12109 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A1P12109 AP001893.2-201ENST00000526949 202 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 DEFB109D-201ENST00000529497 240 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AC068587.4-201ENST00000533893 186 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A1P12109 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A1P12109 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A1P12109 CYCSP2-201ENST00000558168 301 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A1P12109 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A1P12109 AL133338.2-201ENST00000604292 736 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AC008277.2-201ENST00000605196 797 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 ARF4P1-201ENST00000605447 541 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AC231657.1-201ENST00000624313 397 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 AC026634.1-201ENST00000634369 198 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A1P12109 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A1P12109 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A1P12109 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A1P12109 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms