Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MIR649-201ENST00000384843 97 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 MIR200C-201ENST00000384980 68 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CLDN9O95484 RNU2-72P-201ENST00000411175 163 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 SYF2P2-201ENST00000417620 583 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 RPL21P66-201ENST00000426566 466 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.28□□□□□ -1.88
CLDN9O95484 ATP5JP1-201ENST00000431631 322 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 AC073063.1-201ENST00000434352 607 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 CYCSP43-201ENST00000438233 310 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 ELOCP13-201ENST00000443934 329 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.28□□□□□ -1.88
CLDN9O95484 RBMY2UP-201ENST00000453474 324 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 RPL5P24-201ENST00000463742 885 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 VN1R17P-201ENST00000472048 1090 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.28□□□□□ -1.88
CLDN9O95484 AC112198.1-201ENST00000505369 1220 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.28□□□□□ -1.88
CLDN9O95484 AC109471.1-201ENST00000511631 612 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 RN7SKP289-201ENST00000517244 295 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.28□□□□□ -1.88
CLDN9O95484 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.28□□□□□ -1.88
CLDN9O95484 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.28□□□□□ -1.88
CLDN9O95484 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CLDN9O95484 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.28□□□□□ -1.88
CLDN9O95484 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.28□□□□□ -1.88
CLDN9O95484 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.28□□□□□ -1.88
CLDN9O95484 MIR3690-201ENST00000580266 75 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 AC022146.1-201ENST00000595307 847 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 AP005229.2-201ENST00000609980 697 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CLDN9O95484 AC008121.2-201ENST00000614647 523 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 AC090116.1-201ENST00000615679 446 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 AC068722.2-201ENST00000618734 544 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.28□□□□□ -1.88
CLDN9O95484 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.28□□□□□ -1.88
CLDN9O95484 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.28□□□□□ -1.88
CLDN9O95484 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CLDN9O95484 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.28□□□□□ -1.88
CLDN9O95484 AP001350.1-201ENST00000601906 1524 ntBASIC3.28□□□□□ -1.88
CLDN9O95484 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CLDN9O95484 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.28□□□□□ -1.88
CLDN9O95484 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.89
CLDN9O95484 AC117529.2-201ENST00000512159 2068 ntBASIC3.28□□□□□ -1.89
CLDN9O95484 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLDN9O95484 MIR208A-201ENST00000362287 71 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.27□□□□□ -1.89
CLDN9O95484 RNU6-354P-201ENST00000383862 107 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 RNU6-610P-201ENST00000384264 107 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CLDN9O95484 RNA5SP56-201ENST00000410277 118 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 RNA5SP31-201ENST00000411144 127 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.27□□□□□ -1.89
CLDN9O95484 GLRXP1-201ENST00000423261 334 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 AC091286.1-201ENST00000431233 461 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 AL050321.1-201ENST00000432363 400 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 VDAC1P3-201ENST00000434069 851 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLDN9O95484 AL662791.1-201ENST00000441992 928 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 AL133547.1-201ENST00000448546 220 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.27□□□□□ -1.89
CLDN9O95484 AC104073.1-201ENST00000451988 151 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 RPL6P9-201ENST00000466502 859 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 RPL23AP14-201ENST00000468281 468 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.27□□□□□ -1.89
CLDN9O95484 AC025518.1-201ENST00000479856 347 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 RPS4XP13-201ENST00000483219 789 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 FCF1P8-201ENST00000510322 597 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 AC113192.3-201ENST00000529152 742 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.27□□□□□ -1.89
CLDN9O95484 MTND5P21-201ENST00000531961 522 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.27□□□□□ -1.89
CLDN9O95484 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.27□□□□□ -1.89
CLDN9O95484 AC092474.3-201ENST00000603022 568 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.27□□□□□ -1.89
CLDN9O95484 AC244100.1-202ENST00000621554 382 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.27□□□□□ -1.89
CLDN9O95484 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CLDN9O95484 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLDN9O95484 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLDN9O95484 AL121594.5-201ENST00000631724 573 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLDN9O95484 AL034408.1-202ENST00000636088 415 ntBASIC3.27□□□□□ -1.89
CLDN9O95484 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLDN9O95484 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
CLDN9O95484 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.26□□□□□ -1.89
CLDN9O95484 RIOK3P1-201ENST00000418778 1528 ntBASIC3.26□□□□□ -1.89
CLDN9O95484 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CLDN9O95484 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CLDN9O95484 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.26□□□□□ -1.89
CLDN9O95484 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CLDN9O95484 RNU6-353P-201ENST00000364266 108 ntBASIC3.26□□□□□ -1.89
CLDN9O95484 OR1L1-202ENST00000373686 1083 ntBASIC3.26□□□□□ -1.89
CLDN9O95484 SNORD17-201ENST00000390930 237 ntBASIC3.26□□□□□ -1.89
CLDN9O95484 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.26□□□□□ -1.89
CLDN9O95484 SKINT1L-201ENST00000401057 817 ntBASIC3.26□□□□□ -1.89
CLDN9O95484 GSTA8P-201ENST00000404253 637 ntBASIC3.26□□□□□ -1.89
CLDN9O95484 AL583834.1-201ENST00000406943 343 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms