Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 C1DP1-201ENST00000426049 402 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 RPL31P54-201ENST00000429803 370 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AL050321.1-201ENST00000432363 400 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 RPL23AP16-201ENST00000441715 421 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AL358232.1-201ENST00000448030 501 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 COX6CP18-201ENST00000448769 222 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 TRBV26-201ENST00000456572 344 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 MTCO3P2-201ENST00000457365 171 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC084024.2-201ENST00000503480 791 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 BOLA3P3-201ENST00000505182 232 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 RNU2-27P-201ENST00000516185 142 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 RN7SKP116-201ENST00000516902 319 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 ZNF705CP-201ENST00000530515 889 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AP001317.1-201ENST00000531194 960 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 MTCYBP27-201ENST00000555160 670 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC107954.1-201ENST00000565906 727 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 MIR5708-201ENST00000579723 85 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC008739.3-201ENST00000603262 127 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC025946.2-201ENST00000603398 234 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC025588.3-201ENST00000604182 274 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC112220.2-201ENST00000605513 533 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC097504.2-201ENST00000608088 454 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AL713922.2-201ENST00000619384 716 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC022149.2-201ENST00000621061 203 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC026634.1-201ENST00000634369 198 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 MFSD8-245ENST00000641743 948 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 ZNF37BP-203ENST00000452306 1352 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 RNVU1-3-201ENST00000364313 161 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 MIR620-201ENST00000385232 95 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AL079342.2-201ENST00000403367 482 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 OSTCP5-201ENST00000425293 453 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 YME1L1P1-201ENST00000429435 297 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AL159987.2-201ENST00000432754 307 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 RPS29P31-201ENST00000446147 164 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC008155.2-201ENST00000464337 397 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 VPS26AP1-201ENST00000483197 979 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC079203.1-201ENST00000487972 404 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC010374.2-201ENST00000512933 535 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC010928.3-201ENST00000587712 541 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AL158050.2-201ENST00000605336 568 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC015967.1-201ENST00000619893 476 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC009269.6-201ENST00000621778 588 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 U6.105-201ENST00000637379 88 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AC099654.8-201ENST00000637757 681 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 ZNF663P-202ENST00000641770 1131 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AL645937.1-201ENST00000641739 1652 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 AL356274.2-201ENST00000624379 3752 ntBASIC3.52□□□□□ -1.85
LHX3Q9UBR4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC130650.2-201ENST00000618736 2403 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 RNU6-492P-201ENST00000363035 104 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms