Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AP005205.1-201ENST00000563503 508 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 RN7SL600P-201ENST00000581811 299 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AL606490.9-201ENST00000603331 271 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC106028.5-201ENST00000610332 395 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 MIR6867-201ENST00000610636 67 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC015967.1-201ENST00000619893 476 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 OR5H2-201ENST00000355273 945 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 RNA5SP399-201ENST00000364003 117 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 RNA5SP130-201ENST00000364431 114 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 SNORA62.3-201ENST00000365110 153 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 MIR23B-201ENST00000384832 97 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 FAT1P1-201ENST00000406588 507 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 RN7SKP285-201ENST00000410137 318 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AC005345.1-201ENST00000431868 217 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AC074367.1-201ENST00000438685 1125 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 HSPE1P28-201ENST00000443139 211 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 MOB1AP2-201ENST00000446060 614 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 Z95327.1-201ENST00000446082 482 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 GXYLT1P1-201ENST00000446657 490 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AC140076.1-201ENST00000449897 361 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 RNU7-140P-201ENST00000459546 60 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 PLGLA-201ENST00000465668 449 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-1231P-201ENST00000517185 103 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 OR4P1P-201ENST00000530808 1136 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AL845331.3-202ENST00000562856 261 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 MIR4789-201ENST00000577469 82 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 MIR4738-201ENST00000579134 87 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AC022146.1-201ENST00000595307 847 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AL133393.1-201ENST00000603277 287 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 VN1R74P-201ENST00000613259 503 ntBASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.51□□□□□ -1.85
ZNF540Q8NDQ6 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AL136520.1-201ENST00000600311 1322 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 RLIMP1-201ENST00000339626 1680 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 SNORD116-23-201ENST00000384645 92 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 MIR134-201ENST00000385258 73 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 RPL21P65-201ENST00000406094 466 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 RN7SKP159-201ENST00000410657 292 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 HSPE1P1-201ENST00000421494 318 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 USP9YP36-201ENST00000424581 829 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 DPPA2P1-201ENST00000428060 556 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 MTATP6P11-201ENST00000428071 670 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 MOB1AP1-201ENST00000430903 535 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 MTND4LP10-201ENST00000435146 291 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 MTCO1P48-201ENST00000448024 1096 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 RPL7P15-201ENST00000461190 712 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AP002812.1-201ENST00000495378 474 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 KLRA1P-201ENST00000503499 986 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 COL6A4P2-205ENST00000509855 506 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 FAM60BP-201ENST00000578364 658 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 MIR4425-201ENST00000580572 84 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AC026741.1-201ENST00000605892 482 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 MIR7151-201ENST00000617477 60 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 MIR6076-201ENST00000617521 113 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms