Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC064801.1-201ENST00000612025 407 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC231759.1-201ENST00000616455 597 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC009318.4-201ENST00000620496 486 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 MIR492-201ENST00000638676 116 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC244517.1-201ENST00000606030 2086 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 RNU6-621P-201ENST00000364752 109 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 DEFB109C-201ENST00000382575 264 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 DEFB109B-201ENST00000382656 264 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 MTHFD2P2-201ENST00000407725 247 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 RN7SKP33-201ENST00000410942 340 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AL159169.1-201ENST00000421119 127 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 KCTD10P1-201ENST00000434203 625 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC114755.5-201ENST00000447760 831 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 RPL38P1-201ENST00000460914 211 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 RPL7P19-201ENST00000469948 618 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 RN7SL604P-201ENST00000492589 296 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC034244.1-201ENST00000507687 207 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 RNU1-61P-201ENST00000516107 151 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC010198.2-201ENST00000550612 259 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC009097.3-201ENST00000563557 1018 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 RN7SL600P-201ENST00000581811 299 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AP001029.3-201ENST00000588063 596 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AC009220.3-201ENST00000604318 586 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AL391261.4-201ENST00000616012 481 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 MIR4727-201ENST00000622232 55 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 AL356863.1-201ENST00000623378 1080 ntBASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NUP54Q7Z3B4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC116667.1-201ENST00000604855 2072 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AL121657.1-201ENST00000327215 531 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 SNORA60-201ENST00000362396 134 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 RNU6-989P-201ENST00000362756 107 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 SNORA51.6-201ENST00000384151 125 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 RNU6-83P-201ENST00000384568 112 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AL022722.2-201ENST00000402519 180 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AL024474.1-201ENST00000404655 591 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC091390.1-201ENST00000433904 331 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 MTND2P20-201ENST00000440805 661 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC006011.1-201ENST00000442758 349 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AL591719.1-201ENST00000444669 744 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 MTCYBP11-201ENST00000447254 1109 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AL133477.1-201ENST00000457472 514 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 RPS7P7-201ENST00000463499 571 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC007537.2-201ENST00000472093 511 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC091951.3-201ENST00000504093 246 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC118282.1-201ENST00000506408 765 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC004062.1-201ENST00000509926 645 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 RNU5A-4P-201ENST00000516588 111 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 Y_RNA.717-201ENST00000517106 92 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 MRPS36P3-201ENST00000519284 130 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 SLC2A13P1-201ENST00000531560 322 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms