Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.11□□□□□ -1.59
KRT40Q6A162 AC124947.2-202ENST00000552735 133 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 MIR3913-1-201ENST00000577744 102 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.11□□□□□ -1.59
KRT40Q6A162 AC091135.1-201ENST00000585943 307 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.11□□□□□ -1.59
KRT40Q6A162 AC115286.1-201ENST00000604298 434 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 AL022154.1-201ENST00000604698 785 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 AL159169.3-201ENST00000608871 561 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 AL359314.1-201ENST00000616913 261 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
KRT40Q6A162 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC5.11□□□□□ -1.59
KRT40Q6A162 RNA5SP196-201ENST00000625967 102 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC5.11□□□□□ -1.59
KRT40Q6A162 CRYM-AS1-204ENST00000637983 556 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
KRT40Q6A162 VPS35P1-201ENST00000563400 1518 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 AC017104.4-201ENST00000636283 1592 ntBASIC5.11□□□□□ -1.59
KRT40Q6A162 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
KRT40Q6A162 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
KRT40Q6A162 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
KRT40Q6A162 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
KRT40Q6A162 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
KRT40Q6A162 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
KRT40Q6A162 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC5.1□□□□□ -1.59
KRT40Q6A162 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
KRT40Q6A162 RNU5E-5P-201ENST00000365379 116 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
KRT40Q6A162 SNORA51.12-201ENST00000384448 134 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
KRT40Q6A162 RPS20P14-201ENST00000412545 360 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AC109780.2-201ENST00000413467 845 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.1□□□□□ -1.59
KRT40Q6A162 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.1□□□□□ -1.59
KRT40Q6A162 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.1□□□□□ -1.59
KRT40Q6A162 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.1□□□□□ -1.59
KRT40Q6A162 AL831737.1-201ENST00000441288 271 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 MTCO1P14-201ENST00000441695 1559 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AL589765.3-201ENST00000446084 462 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC5.1□□□□□ -1.59
KRT40Q6A162 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.1□□□□□ -1.59
KRT40Q6A162 RPL21P71-201ENST00000465598 459 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 RPL21P126-201ENST00000470049 478 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.1□□□□□ -1.59
KRT40Q6A162 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC5.1□□□□□ -1.59
KRT40Q6A162 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.1□□□□□ -1.59
KRT40Q6A162 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC5.1□□□□□ -1.59
KRT40Q6A162 SNORA67.7-201ENST00000516664 135 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AC023632.4-201ENST00000517783 191 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.1□□□□□ -1.59
KRT40Q6A162 AC100770.1-201ENST00000532310 322 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.1□□□□□ -1.59
KRT40Q6A162 SNORA59B-202ENST00000578183 701 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC5.1□□□□□ -1.59
KRT40Q6A162 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
KRT40Q6A162 RNU6-88P-201ENST00000606801 100 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.1□□□□□ -1.59
KRT40Q6A162 AC006133.1-201ENST00000617106 264 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 AL445567.2-201ENST00000618935 498 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
KRT40Q6A162 AC022140.2-201ENST00000623500 188 ntBASIC5.1□□□□□ -1.59
KRT40Q6A162 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
KRT40Q6A162 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
KRT40Q6A162 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
KRT40Q6A162 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
KRT40Q6A162 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
KRT40Q6A162 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.09□□□□□ -1.59
KRT40Q6A162 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
KRT40Q6A162 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC5.09□□□□□ -1.59
KRT40Q6A162 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AC008033.1-201ENST00000216407 1162 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 SNRPEP3-201ENST00000338402 276 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 RNU6-462P-201ENST00000362659 105 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 RNU6-115P-201ENST00000364310 107 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
KRT40Q6A162 RNU6-657P-201ENST00000383904 107 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 SNORA40.3-201ENST00000390964 122 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 SNORD115-47-201ENST00000391226 86 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
KRT40Q6A162 RPS24P12-201ENST00000402084 394 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 RPS27AP14-201ENST00000422868 454 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC5.09□□□□□ -1.59
KRT40Q6A162 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.09□□□□□ -1.59
KRT40Q6A162 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AC004865.1-201ENST00000442276 1003 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 AL359385.1-201ENST00000456509 365 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 AC053481.1-201ENST00000467217 306 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 RPL7P19-201ENST00000469948 618 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.09□□□□□ -1.59
KRT40Q6A162 AC022483.1-201ENST00000514020 567 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 PAICSP4-201ENST00000517543 1253 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 MRPL49P2-201ENST00000521066 465 ntBASIC5.09□□□□□ -1.59
KRT40Q6A162 OR5M7P-201ENST00000526140 972 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms