Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC027544.3-201ENST00000535082 757 ntBASIC4.72□□□□□ -1.65
MSX2P35548 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX2P35548 AC093027.1-201ENST00000546698 429 ntBASIC4.72□□□□□ -1.65
MSX2P35548 HSPE1P3-201ENST00000559254 309 ntBASIC4.72□□□□□ -1.65
MSX2P35548 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX2P35548 AC015720.2-201ENST00000567709 334 ntBASIC4.72□□□□□ -1.65
MSX2P35548 MIR1273E-201ENST00000581165 102 ntBASIC4.72□□□□□ -1.65
MSX2P35548 AC233702.9-201ENST00000581528 203 ntBASIC4.72□□□□□ -1.65
MSX2P35548 MIR4505-201ENST00000582238 73 ntBASIC4.72□□□□□ -1.65
MSX2P35548 SNORD39.3-201ENST00000584451 71 ntBASIC4.72□□□□□ -1.65
MSX2P35548 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX2P35548 MIR98-201ENST00000606724 119 ntBASIC4.72□□□□□ -1.65
MSX2P35548 AL161734.1-201ENST00000609720 557 ntBASIC4.72□□□□□ -1.65
MSX2P35548 AL132765.2-201ENST00000610812 351 ntBASIC4.72□□□□□ -1.65
MSX2P35548 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.72□□□□□ -1.65
MSX2P35548 AC068722.2-201ENST00000618734 544 ntBASIC4.72□□□□□ -1.65
MSX2P35548 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.72□□□□□ -1.65
MSX2P35548 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSX2P35548 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
MSX2P35548 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
MSX2P35548 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX2P35548 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.72□□□□□ -1.65
MSX2P35548 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.72□□□□□ -1.65
MSX2P35548 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX2P35548 AC114546.3-201ENST00000623582 1734 ntBASIC4.72□□□□□ -1.65
MSX2P35548 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.72□□□□□ -1.65
MSX2P35548 AP002907.1-201ENST00000606361 1430 ntBASIC4.72□□□□□ -1.65
MSX2P35548 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
MSX2P35548 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.71□□□□□ -1.66
MSX2P35548 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSX2P35548 AP001273.1-201ENST00000624493 3152 ntBASIC4.71□□□□□ -1.66
MSX2P35548 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSX2P35548 Y_RNA.46-201ENST00000362695 102 ntBASIC4.71□□□□□ -1.66
MSX2P35548 RNU6-984P-201ENST00000363236 109 ntBASIC4.71□□□□□ -1.66
MSX2P35548 RNU1-83P-201ENST00000363426 164 ntBASIC4.71□□□□□ -1.66
MSX2P35548 RNA5SP242-201ENST00000364171 118 ntBASIC4.71□□□□□ -1.66
MSX2P35548 SNORD81.2-201ENST00000365153 76 ntBASIC4.71□□□□□ -1.66
MSX2P35548 DHFRP6-201ENST00000401776 268 ntBASIC4.71□□□□□ -1.66
MSX2P35548 OR9R1P-201ENST00000412200 877 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC4.71□□□□□ -1.66
MSX2P35548 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.71□□□□□ -1.66
MSX2P35548 AL031736.2-201ENST00000426573 787 ntBASIC4.71□□□□□ -1.66
MSX2P35548 OR51AB1P-201ENST00000429046 620 ntBASIC4.71□□□□□ -1.66
MSX2P35548 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.71□□□□□ -1.66
MSX2P35548 ATP5HP2-201ENST00000433885 485 ntBASIC4.71□□□□□ -1.66
MSX2P35548 CEACAMP1-201ENST00000434624 1035 ntBASIC4.71□□□□□ -1.66
MSX2P35548 RPS3AP54-201ENST00000435535 734 ntBASIC4.71□□□□□ -1.66
MSX2P35548 TDGF1P1-201ENST00000445734 527 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.71□□□□□ -1.66
MSX2P35548 MTND4P19-201ENST00000446659 478 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.71□□□□□ -1.66
MSX2P35548 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.71□□□□□ -1.66
MSX2P35548 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.71□□□□□ -1.66
MSX2P35548 RPL31P50-201ENST00000471002 296 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC023194.1-201ENST00000493084 308 ntBASIC4.71□□□□□ -1.66
MSX2P35548 RPL30P11-201ENST00000495304 339 ntBASIC4.71□□□□□ -1.66
MSX2P35548 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.71□□□□□ -1.66
MSX2P35548 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.71□□□□□ -1.66
MSX2P35548 RNU6-835P-201ENST00000516974 104 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC104986.1-201ENST00000517978 436 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.71□□□□□ -1.66
MSX2P35548 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.71□□□□□ -1.66
MSX2P35548 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
MSX2P35548 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.71□□□□□ -1.66
MSX2P35548 AC063949.1-201ENST00000552900 865 ntBASIC4.71□□□□□ -1.66
MSX2P35548 SUB1P2-201ENST00000556401 297 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.71□□□□□ -1.66
MSX2P35548 MIR4716-201ENST00000579628 84 ntBASIC4.71□□□□□ -1.66
MSX2P35548 MIR4443-201ENST00000585052 53 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC011712.1-201ENST00000588959 234 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSX2P35548 AC013553.2-201ENST00000604244 589 ntBASIC4.71□□□□□ -1.66
MSX2P35548 Y_RNA.812-201ENST00000610788 101 ntBASIC4.71□□□□□ -1.66
MSX2P35548 Y_RNA.784-201ENST00000613803 101 ntBASIC4.71□□□□□ -1.66
MSX2P35548 Y_RNA.787-201ENST00000616522 101 ntBASIC4.71□□□□□ -1.66
MSX2P35548 Y_RNA.780-201ENST00000617336 101 ntBASIC4.71□□□□□ -1.66
MSX2P35548 Y_RNA.801-201ENST00000619005 101 ntBASIC4.71□□□□□ -1.66
MSX2P35548 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AL158801.5-201ENST00000623123 465 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
MSX2P35548 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.71□□□□□ -1.66
MSX2P35548 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSX2P35548 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
MSX2P35548 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
MSX2P35548 AC097504.1-201ENST00000515103 2415 ntBASIC4.71□□□□□ -1.66
MSX2P35548 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX2P35548 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
MSX2P35548 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX2P35548 SNORA73.1-201ENST00000363107 205 ntBASIC4.7□□□□□ -1.66
MSX2P35548 Y_RNA.326-201ENST00000365176 113 ntBASIC4.7□□□□□ -1.66
MSX2P35548 Y_RNA.394-201ENST00000383942 103 ntBASIC4.7□□□□□ -1.66
MSX2P35548 MIR600-201ENST00000385007 98 ntBASIC4.7□□□□□ -1.66
MSX2P35548 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSX2P35548 AP000580.1-201ENST00000404439 358 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AL356432.1-201ENST00000405809 419 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms