Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.54□□□□□ -0.24
Sdc1P18828 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC13.54□□□□□ -0.24
Sdc1P18828 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Sdc1P18828 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sdc1P18828 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
Sdc1P18828 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Sdc1P18828 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Sdc1P18828 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
Sdc1P18828 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
Sdc1P18828 AC140264.2-202ENSMUST00000218746 817 ntBASIC13.53□□□□□ -0.24
Sdc1P18828 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Gm29340-201ENSMUST00000188763 3854 ntBASIC13.53□□□□□ -0.24
Sdc1P18828 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC13.53□□□□□ -0.24
Sdc1P18828 Gm45605-201ENSMUST00000210265 4269 ntBASIC13.53□□□□□ -0.24
Sdc1P18828 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Sdc1P18828 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sdc1P18828 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sdc1P18828 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sdc1P18828 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Sdc1P18828 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC13.52□□□□□ -0.24
Sdc1P18828 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sdc1P18828 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sdc1P18828 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Sdc1P18828 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC13.52□□□□□ -0.25
Sdc1P18828 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC13.52□□□□□ -0.25
Sdc1P18828 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Sdc1P18828 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Sdc1P18828 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
Sdc1P18828 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Sdc1P18828 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sdc1P18828 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sdc1P18828 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Sdc1P18828 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC13.51□□□□□ -0.25
Sdc1P18828 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
Sdc1P18828 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC13.51□□□□□ -0.25
Sdc1P18828 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sdc1P18828 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC13.51□□□□□ -0.25
Sdc1P18828 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC13.51□□□□□ -0.25
Sdc1P18828 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC13.51□□□□□ -0.25
Sdc1P18828 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
Sdc1P18828 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC13.51□□□□□ -0.25
Sdc1P18828 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms