Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC006206.1-201ENST00000544842 3387 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC093849.1-201ENST00000563631 2209 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AL445437.1-201ENST00000623157 3087 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC107027.3-201ENST00000565095 3473 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 RN7SKP145-201ENST00000363291 303 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 Y_RNA.138-201ENST00000363462 102 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 RNU6-1243P-201ENST00000364028 107 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 ADAM24P-201ENST00000398655 2101 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 MIR1286-201ENST00000408112 78 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 RNU2-50P-201ENST00000410494 143 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 NAP1L1P2-201ENST00000414182 1089 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC127526.1-201ENST00000417526 366 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AL353729.1-201ENST00000425044 720 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 DUTP6-201ENST00000425573 462 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 KCTD9P3-201ENST00000434597 1169 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 TIMM9P1-201ENST00000436122 256 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 UBE2V1P13-201ENST00000436983 439 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC011225.1-201ENST00000457751 369 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 snoU13.7-201ENST00000459220 104 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 MRPS17P3-201ENST00000465453 385 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 RPS4XP1-201ENST00000482189 787 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC021382.1-201ENST00000483523 359 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 RN7SL629P-201ENST00000489622 285 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC068993.1-201ENST00000546724 589 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC126177.5-201ENST00000549599 178 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AL049779.2-201ENST00000553847 315 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 SCOCP1-201ENST00000554676 349 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC018552.3-201ENST00000567416 561 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 MIR4742-201ENST00000581069 85 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 BNIP3P22-201ENST00000593399 556 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 IMMP1LP3-201ENST00000604197 224 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC113139.1-201ENST00000605049 239 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AL512624.1-201ENST00000613638 469 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AL603758.1-201ENST00000618654 241 ntBASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.07□□□□□ -1.6
PTCHD1Q96NR3 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 OR9K1P-202ENST00000641111 3217 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 ELL2P4-201ENST00000446870 1376 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 Y_RNA.184-201ENST00000363884 108 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 RNU4-48P-201ENST00000365559 182 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 RPL6P29-201ENST00000414863 865 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AL355433.1-201ENST00000422804 300 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 MTND2P23-201ENST00000422990 651 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AC024082.2-201ENST00000434771 238 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 RPS20P5-201ENST00000434808 360 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 NDUFB4P8-201ENST00000435351 367 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 GAPDHP25-201ENST00000447061 1001 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AC073415.1-201ENST00000449240 153 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 NANOGP10-201ENST00000453325 895 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 HMGN2P26-201ENST00000463169 339 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 GMFBP1-201ENST00000467831 427 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 FTH1P24-201ENST00000503502 462 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AC091912.1-201ENST00000511351 248 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 AC114797.1-201ENST00000514003 728 ntBASIC5.06□□□□□ -1.6
PTCHD1Q96NR3 RNU4-49P-201ENST00000516080 140 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms