Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
ERCC4Q92889 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.21□□□□□ -1.57
ERCC4Q92889 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
ERCC4Q92889 AC090971.4-201ENST00000560291 1800 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AC117529.2-201ENST00000512159 2068 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 RNU1-20P-201ENST00000363314 162 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
ERCC4Q92889 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.21□□□□□ -1.58
ERCC4Q92889 Y_RNA.390-201ENST00000383932 102 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AL133270.1-201ENST00000402635 279 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 CIR1P3-201ENST00000405137 479 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 MIR1305-201ENST00000408300 86 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
ERCC4Q92889 DPPA2P1-201ENST00000428060 556 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC5.21□□□□□ -1.58
ERCC4Q92889 RGS5-217ENST00000451759 835 ntTSL 3 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.21□□□□□ -1.58
ERCC4Q92889 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.21□□□□□ -1.58
ERCC4Q92889 RNU7-136P-201ENST00000458819 69 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AL121769.1-201ENST00000469473 401 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.21□□□□□ -1.58
ERCC4Q92889 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
ERCC4Q92889 RPS3AP17-201ENST00000472594 777 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 RPL23AP65-201ENST00000475608 468 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AC108475.1-201ENST00000507880 950 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.21□□□□□ -1.58
ERCC4Q92889 RNU6-430P-201ENST00000517078 107 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AC013828.2-201ENST00000532487 235 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC5.21□□□□□ -1.58
ERCC4Q92889 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.21□□□□□ -1.58
ERCC4Q92889 BNIP3P23-201ENST00000599655 511 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AC004067.1-201ENST00000608733 700 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
ERCC4Q92889 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
ERCC4Q92889 AC136475.10-201ENST00000620253 385 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AL139089.1-201ENST00000620372 975 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AC087385.3-201ENST00000620477 187 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AC138649.3-201ENST00000622154 254 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AC091905.4-201ENST00000623432 202 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
ERCC4Q92889 MAPK10-304ENST00000641341 3984 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
ERCC4Q92889 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AC015813.6-201ENST00000624409 5808 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.21□□□□□ -1.58
ERCC4Q92889 AC107081.3-201ENST00000612715 2034 ntBASIC5.21□□□□□ -1.58
ERCC4Q92889 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.21□□□□□ -1.58
ERCC4Q92889 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
ERCC4Q92889 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
ERCC4Q92889 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
ERCC4Q92889 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.2□□□□□ -1.58
ERCC4Q92889 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
ERCC4Q92889 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
ERCC4Q92889 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
ERCC4Q92889 MIR550A3-201ENST00000390735 95 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AL109941.1-201ENST00000401925 229 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.2□□□□□ -1.58
ERCC4Q92889 RPS3AP3-201ENST00000411933 242 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.2□□□□□ -1.58
ERCC4Q92889 EIF4EP1-201ENST00000422311 642 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 YWHAZP8-201ENST00000436935 731 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 SNRPEP7-201ENST00000438350 220 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 LSM1P1-201ENST00000438629 273 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 VN1R34P-201ENST00000447387 883 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 WASF1P1-201ENST00000447560 1131 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 ARPC3P5-201ENST00000448802 534 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AC146507.1-201ENST00000468335 354 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AP000893.1-201ENST00000474462 794 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AC106872.3-201ENST00000495104 446 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 SCARNA22-201ENST00000503991 125 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AC022447.3-201ENST00000506865 495 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 PRDX4P1-201ENST00000507189 574 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AF131216.2-201ENST00000512316 564 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 RNA5SP497-201ENST00000516081 97 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
ERCC4Q92889 OR5D15P-201ENST00000531671 942 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.2□□□□□ -1.58
ERCC4Q92889 BGLT3-201ENST00000564523 994 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AP001180.3-201ENST00000582221 145 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
ERCC4Q92889 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AP000860.1-201ENST00000605250 559 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AC091979.2-201ENST00000607514 214 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 AC103710.1-201ENST00000610003 901 ntBASIC5.2□□□□□ -1.58
ERCC4Q92889 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
ERCC4Q92889 AC123768.4-201ENST00000616244 701 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms