Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC115989.2-201ENST00000578640 563 ntBASIC3.33□□□□□ -1.88
CCDC112Q8NEF3 HMGN2P28-201ENST00000606102 262 ntBASIC3.33□□□□□ -1.88
CCDC112Q8NEF3 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC112Q8NEF3 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC112Q8NEF3 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC112Q8NEF3 AC092447.7-201ENST00000422212 1621 ntBASIC3.33□□□□□ -1.88
CCDC112Q8NEF3 AL161431.1-201ENST00000618966 4205 ntBASIC3.33□□□□□ -1.88
CCDC112Q8NEF3 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AL035425.3-201ENST00000564206 4996 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 RNU6-317P-201ENST00000384031 107 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AL357075.1-201ENST00000404107 726 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 RPL7P25-201ENST00000404151 721 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 HSFY1P1-201ENST00000423928 1178 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 BUD31P2-201ENST00000449374 300 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 RPS4XP10-201ENST00000465034 731 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 RPS26P21-201ENST00000475397 348 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 SETP6-201ENST00000479329 568 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC016550.3-201ENST00000515706 767 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 SCARNA13-201ENST00000516672 275 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AP000889.1-201ENST00000530968 660 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC010735.1-201ENST00000567305 1026 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC006504.3-201ENST00000586818 523 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC245128.3-201ENST00000594721 748 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC090525.3-201ENST00000605601 189 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AL451074.6-201ENST00000608512 729 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC092184.1-201ENST00000625042 715 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AL359715.4-201ENST00000606629 1436 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 CNOT6LP1-201ENST00000559681 1462 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 AC024341.1-201ENST00000526444 1552 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 MTND5P3-201ENST00000438536 1800 ntBASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC112Q8NEF3 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 RNA5SP391-201ENST00000363456 119 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 RPL7P46-201ENST00000425129 740 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 OR6C71P-201ENST00000432580 913 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 RPS29P6-201ENST00000438196 145 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 TRIM60P18-201ENST00000441518 828 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AC104308.1-201ENST00000454621 333 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 NCOR1P1-202ENST00000486162 291 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AC006483.1-201ENST00000487308 313 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AC078899.3-201ENST00000599065 212 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AC079880.2-201ENST00000603790 1213 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AL359198.2-201ENST00000611836 194 ntBASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC112Q8NEF3 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 RNA5SP295-201ENST00000362655 121 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 RNA5SP498-201ENST00000411342 120 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AC241520.1-201ENST00000422654 1099 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 UBE2V1P1-201ENST00000430836 445 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 RPL21P2-201ENST00000440049 481 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 RPL31P13-201ENST00000484151 370 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 RPL9P33-201ENST00000484311 566 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 RPL23AP55-201ENST00000498163 452 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 TMEM248P1-201ENST00000510579 951 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AC034244.2-201ENST00000514668 858 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AC034105.3-201ENST00000565294 442 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 MTND4LP24-201ENST00000572277 291 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AL020991.1-201ENST00000612314 373 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 MIR7973-1-201ENST00000614683 76 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 AC010338.1-201ENST00000621823 717 ntBASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC112Q8NEF3 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms