Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC011477.5-201ENST00000586571 259 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA1P49639 AL139286.2-201ENST00000606838 396 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA1P49639 AC013562.2-201ENST00000611632 603 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AC122108.2-201ENST00000611946 526 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA1P49639 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXA1P49639 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA1P49639 AC135352.1-201ENST00000506173 1418 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 MFSD4BP1-201ENST00000513330 1552 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HOXA1P49639 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA1P49639 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 GDI2P1-201ENST00000429312 1336 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA1P49639 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 AC139769.1-204ENST00000472297 1931 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.65□□□□□ -1.82
HOXA1P49639 NXPH1-205ENST00000602349 1953 ntBASIC3.65□□□□□ -1.82
HOXA1P49639 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
HOXA1P49639 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA1P49639 MTND4P5-201ENST00000435821 1374 ntBASIC3.65□□□□□ -1.82
HOXA1P49639 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA1P49639 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA1P49639 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
HOXA1P49639 AL022578.1-201ENST00000439330 1433 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 OR4G11P-202ENST00000642116 1414 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 SNORA74A-201ENST00000364089 198 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA1P49639 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
HOXA1P49639 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 MRM2-202ENST00000407040 582 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC109780.2-201ENST00000413467 845 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AL139128.1-201ENST00000413921 941 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 NUP35P2-201ENST00000416748 943 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA1P49639 AL592293.2-201ENST00000422292 996 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC096632.1-201ENST00000427395 310 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA1P49639 RBMY2QP-201ENST00000429799 1147 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 ARF4P2-201ENST00000430209 526 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AL365184.2-201ENST00000431139 435 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 UBE2FP3-201ENST00000436366 524 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 LSM1P1-201ENST00000438629 273 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 RPL23AP16-201ENST00000441715 421 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 USP9YP29-201ENST00000445112 563 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC104073.1-201ENST00000451988 151 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXA1P49639 USP9YP10-201ENST00000454868 628 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC079804.1-201ENST00000461922 436 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 RPL9P32-201ENST00000464118 620 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC010683.1-201ENST00000473673 378 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 BX284632.1-201ENST00000478218 541 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 RPSAP50-201ENST00000481955 852 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 RPL36AP41-201ENST00000493820 306 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC108941.1-201ENST00000502853 530 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA1P49639 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 BTF3P13-201ENST00000513224 490 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA1P49639 CR383656.6-201ENST00000550518 394 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXA1P49639 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC136618.2-201ENST00000575091 400 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 MIR4637-201ENST00000582405 84 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC005084.1-201ENST00000605160 304 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC010678.1-201ENST00000614118 713 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 MIR6864-201ENST00000617935 70 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC092628.2-201ENST00000622492 339 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA1P49639 TEX41-256ENST00000626411 368 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA1P49639 AC084035.1-201ENST00000634543 607 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 AC006927.3-201ENST00000638789 384 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA1P49639 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms