Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD3P31249 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXD3P31249 RPS3AP4-201ENST00000555161 764 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AC011477.5-201ENST00000586571 259 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 TPMTP1-201ENST00000592307 737 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 RPL26P30-202ENST00000602923 645 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AC020910.3-201ENST00000603701 874 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AP000860.1-201ENST00000605250 559 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AL109618.2-201ENST00000605527 211 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AC113194.1-201ENST00000606037 500 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AL513477.2-201ENST00000607858 568 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 MIR6780A-201ENST00000615089 68 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 U4.5-201ENST00000617137 123 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD3P31249 AL139089.1-201ENST00000620372 975 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AL445264.1-201ENST00000621719 171 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD3P31249 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD3P31249 FAM157B-203ENST00000639350 358 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
HOXD3P31249 AC073136.1-201ENST00000449426 2884 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXD3P31249 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC3.77□□□□□ -1.81
HOXD3P31249 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD3P31249 AC095050.2-201ENST00000510748 1458 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
HOXD3P31249 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD3P31249 MTND5P28-201ENST00000438005 1594 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
HOXD3P31249 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD3P31249 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD3P31249 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD3P31249 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXD3P31249 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXD3P31249 RNU6-744P-201ENST00000365557 107 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 Y_RNA.390-201ENST00000383932 102 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 RNU6-1316P-201ENST00000384242 108 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 RPL31P1-201ENST00000398116 372 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 MIR298-201ENST00000401212 88 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC007738.1-201ENST00000413892 348 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 COX6CP15-201ENST00000426313 211 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AL589872.1-201ENST00000426602 288 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 ISCA1P1-201ENST00000426679 387 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 ISCA1P6-201ENST00000427740 390 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 MTND1P2-201ENST00000430604 821 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 MTCYBP45-201ENST00000435243 565 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC009961.2-201ENST00000435771 251 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 AL451074.3-201ENST00000437709 472 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 SKP1P1-201ENST00000438081 489 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC122718.1-201ENST00000439448 744 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 HSPE1P28-201ENST00000443139 211 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 RPL17P49-201ENST00000443728 411 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXD3P31249 AC099563.1-201ENST00000456086 418 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 snoU13.1-201ENST00000459157 104 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 FAM133DP-201ENST00000464802 691 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC021660.1-201ENST00000465006 554 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AL672167.3-201ENST00000465951 960 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXD3P31249 PABPC1P3-201ENST00000469174 459 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXD3P31249 AC092989.1-201ENST00000481235 277 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 AC023424.1-201ENST00000496058 459 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC112204.1-201ENST00000502591 103 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 AC111000.3-201ENST00000508057 576 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC006390.1-201ENST00000508068 283 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 AC104057.1-201ENST00000515547 497 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 RNU6-513P-201ENST00000516104 104 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 RN7SKP276-201ENST00000516242 268 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 MTCO2P4-201ENST00000517968 247 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC105031.1-201ENST00000518550 476 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.76□□□□□ -1.81
HOXD3P31249 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD3P31249 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD3P31249 VN1R79P-201ENST00000593540 513 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 AL390208.1-201ENST00000605885 644 ntBASIC3.76□□□□□ -1.81
HOXD3P31249 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD3P31249 AC103710.1-201ENST00000610003 901 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms