Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A3P25940 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.24□□□□□ -1.89
COL5A3P25940 OR5H5P-201ENST00000503164 928 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.24□□□□□ -1.89
COL5A3P25940 MIR4644-201ENST00000579929 84 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 MIR3605-201ENST00000583214 100 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.24□□□□□ -1.89
COL5A3P25940 SNORA35B-201ENST00000607417 129 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.24□□□□□ -1.89
COL5A3P25940 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
COL5A3P25940 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
COL5A3P25940 AC022031.1-201ENST00000585985 2593 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A3P25940 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC3.24□□□□□ -1.89
COL5A3P25940 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.24□□□□□ -1.89
COL5A3P25940 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.24□□□□□ -1.89
COL5A3P25940 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.24□□□□□ -1.89
COL5A3P25940 AC099063.2-201ENST00000446360 662 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 WASF1P1-201ENST00000447560 1131 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 RN7SL636P-201ENST00000497504 294 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 AC118282.1-201ENST00000506408 765 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 AC119751.1-201ENST00000513357 765 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 RPS27AP18-201ENST00000515536 459 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 MIR4648-201ENST00000580107 72 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 AL139286.1-201ENST00000604465 483 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.24□□□□□ -1.89
COL5A3P25940 MIR6715B-201ENST00000637172 77 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
COL5A3P25940 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC3.24□□□□□ -1.89
COL5A3P25940 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A3P25940 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.23□□□□□ -1.89
COL5A3P25940 AC087565.3-202ENST00000642085 1603 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 RNU6-618P-201ENST00000363518 112 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A3P25940 AC013470.3-201ENST00000420252 1194 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 AL137014.1-201ENST00000420490 1226 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A3P25940 AC016687.1-201ENST00000482574 353 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.23□□□□□ -1.89
COL5A3P25940 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A3P25940 AC107918.3-201ENST00000533272 382 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 AP000873.5-201ENST00000533906 236 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A3P25940 AC090312.2-201ENST00000582687 378 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 AC011492.1-201ENST00000600023 315 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 AC010620.2-201ENST00000600135 313 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 AC022960.2-201ENST00000616300 666 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.23□□□□□ -1.89
COL5A3P25940 NR1H5P-201ENST00000452683 1377 ntBASIC3.23□□□□□ -1.89
COL5A3P25940 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A3P25940 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A3P25940 MIR148B-201ENST00000362252 99 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 AL135786.1-201ENST00000415892 214 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 AC245517.2-201ENST00000442890 346 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A3P25940 AC104058.1-201ENST00000448028 297 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 HMGN1P5-201ENST00000448591 263 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A3P25940 AC234781.5-201ENST00000508429 271 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 LDHBP3-201ENST00000514909 822 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.22□□□□□ -1.89
COL5A3P25940 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A3P25940 AC083760.1-201ENST00000589621 670 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 AL450326.2-201ENST00000421913 1962 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A3P25940 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A3P25940 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A3P25940 RAP1BP1-201ENST00000412709 553 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 OR51A3P-201ENST00000413596 924 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A3P25940 MRPS33P4-201ENST00000434892 317 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A3P25940 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.22□□□□□ -1.89
COL5A3P25940 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A3P25940 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A3P25940 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A3P25940 EEF1A1P37-201ENST00000522748 715 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 PDCL2P2-201ENST00000533651 189 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 OR8L1P-201ENST00000534005 955 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.22□□□□□ -1.89
COL5A3P25940 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A3P25940 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.22□□□□□ -1.89
COL5A3P25940 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A3P25940 AC009159.1-201ENST00000618386 642 ntBASIC3.22□□□□□ -1.89
COL5A3P25940 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL5A3P25940 AC009487.4-201ENST00000624969 3585 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.21□□□□□ -1.9
COL5A3P25940 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL5A3P25940 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
COL5A3P25940 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL5A3P25940 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
COL5A3P25940 RN7SKP44-201ENST00000363602 316 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 AL355379.1-201ENST00000405542 640 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 BX276092.3-201ENST00000424182 230 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 AC034244.2-201ENST00000514668 858 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 RN7SKP24-201ENST00000515888 284 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 RNU6-1231P-201ENST00000517185 103 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 ATP5F1P5-201ENST00000526403 760 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms