Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU2-62P-201ENST00000410868 191 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 HMGN1P24-201ENST00000412282 298 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AL353678.1-201ENST00000422735 741 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 SRSF1P1-201ENST00000424058 520 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA3O43365 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA3O43365 AL365400.1-201ENST00000431854 640 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 KRT8P51-201ENST00000438938 274 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA3O43365 RPS11P7-201ENST00000442125 465 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 RAC1P7-201ENST00000445367 377 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA3O43365 RPL12P39-201ENST00000455456 496 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 SNORD121B-201ENST00000458838 81 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 EIF4EP3-201ENST00000498782 656 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA3O43365 MTCO3P9-201ENST00000506989 781 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC114797.1-201ENST00000514003 728 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 RNU7-30P-201ENST00000516835 62 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 SUB1P1-201ENST00000524415 382 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 HPRT1P3-201ENST00000539521 576 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC011611.1-201ENST00000552179 197 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA3O43365 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA3O43365 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA3O43365 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.38□□□□□ -1.71
HOXA3O43365 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA3O43365 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA3O43365 AL512782.1-201ENST00000603093 364 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC087763.1-201ENST00000603391 286 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC007566.2-201ENST00000603642 413 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC006363.1-201ENST00000603806 463 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC024940.4-201ENST00000605507 246 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC105429.2-201ENST00000610567 517 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC009248.2-201ENST00000619826 254 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 AC068870.2-201ENST00000620635 389 ntBASIC4.38□□□□□ -1.71
HOXA3O43365 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA3O43365 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA3O43365 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
HOXA3O43365 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA3O43365 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA3O43365 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA3O43365 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA3O43365 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
HOXA3O43365 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA3O43365 SAGE4P-201ENST00000442271 3381 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC114774.1-201ENST00000507410 1770 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 PHKBP1-201ENST00000450951 1951 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 OR4G1P-203ENST00000641984 1631 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXA3O43365 U3.2-201ENST00000362981 210 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 RNU5A-8P-201ENST00000364102 114 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 RNU4-48P-201ENST00000365559 182 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HOXA3O43365 RNU6-39P-201ENST00000384344 107 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 ENSAP1-201ENST00000392855 326 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 RPL32P23-201ENST00000397237 405 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXA3O43365 RPL31P2-201ENST00000413849 377 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXA3O43365 DPPA2P2-201ENST00000418220 897 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA3O43365 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA3O43365 AC007161.1-204ENST00000423039 460 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 MTCO3P46-201ENST00000425787 232 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 HMGN2P27-201ENST00000427352 270 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 SRIP2-201ENST00000428470 166 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 RPL5P25-201ENST00000441148 775 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 GEMIN8P3-201ENST00000445417 720 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC010683.1-201ENST00000473673 378 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC231760.1-201ENST00000498002 260 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 RPL38P4-201ENST00000502376 214 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA3O43365 AC105417.1-201ENST00000514691 285 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 RNU6-941P-201ENST00000516346 108 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.37□□□□□ -1.71
HOXA3O43365 AC105029.1-201ENST00000520250 669 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA3O43365 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.37□□□□□ -1.71
HOXA3O43365 AC137627.1-201ENST00000545761 289 ntBASIC4.37□□□□□ -1.71
HOXA3O43365 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms