Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC090281.1-201ENST00000523019 276 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 VN1R85P-201ENST00000601587 426 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AP000403.1-201ENST00000603349 851 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC068276.1-201ENST00000605793 379 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 HSPE1P14-201ENST00000605812 302 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC008966.2-201ENST00000606157 453 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC004492.1-201ENST00000607036 742 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC092354.2-201ENST00000607786 514 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC239868.4-201ENST00000608318 671 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC026585.1-201ENST00000619582 524 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AL590240.3-201ENST00000621416 943 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AL356596.1-201ENST00000624230 379 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC055839.1-201ENST00000634467 498 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 BMS1P21-201ENST00000634565 365 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 MTCO1P23-201ENST00000415223 1526 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 RNU6-501P-201ENST00000364072 100 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 SNORA51.6-201ENST00000384151 125 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 RNU6-1119P-201ENST00000384349 108 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ARF4P3-201ENST00000397387 509 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 SNRPEP2-201ENST00000397592 279 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AL049697.2-201ENST00000403708 294 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 RNU2-16P-201ENST00000410712 136 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AL663109.1-201ENST00000411498 844 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 MTCO3P30-201ENST00000426425 670 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 OR2B7P-201ENST00000429302 934 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 RPS27AP12-201ENST00000429552 465 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 MUPP-201ENST00000438111 566 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC092641.1-201ENST00000440229 772 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 COX6CP12-201ENST00000446748 202 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 H2AFZP5-201ENST00000446960 382 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ELOCP30-201ENST00000447108 299 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 RPL5P32-201ENST00000454085 879 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 SCARNA10-201ENST00000459255 330 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC010683.1-201ENST00000473673 378 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC109458.1-201ENST00000508858 316 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS4AQ9UN37 MTCO1P35-201ENST00000515270 228 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC104986.1-201ENST00000517978 436 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ZNF705CP-201ENST00000530515 889 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC022880.1-201ENST00000534017 973 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC069061.3-201ENST00000582254 823 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ZNF415P1-201ENST00000582279 1166 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 MIR3611-201ENST00000584484 83 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 ABBA01006766.1-201ENST00000584728 294 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC093227.2-201ENST00000589357 285 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC012065.4-201ENST00000602445 679 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC107214.2-201ENST00000608204 634 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC068722.2-201ENST00000618734 544 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 RMST_9.1-201ENST00000619945 193 ntBASIC4.41□□□□□ -1.7
VPS4AQ9UN37 AC068792.1-201ENST00000621354 417 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms