Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 BTBD10P2-201ENST00000404779 676 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AL590084.1-201ENST00000407885 387 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 SNORA3C-201ENST00000408792 125 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 RNA5SP104-201ENST00000410989 118 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 CYP4F29P-201ENST00000420685 446 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 GTF2IP23-201ENST00000423746 351 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC091286.1-201ENST00000431233 461 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 Z77249.1-201ENST00000444622 1175 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 NDUFA5P7-201ENST00000452914 242 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC010307.1-201ENST00000467206 836 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 RPL7P49-201ENST00000471402 708 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC005726.1-201ENST00000494679 427 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 Y_RNA.717-201ENST00000517106 92 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 GTF2IP8-201ENST00000560687 584 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 SULT1C2P1-202ENST00000562418 459 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC009097.3-201ENST00000563557 1018 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC022968.1-201ENST00000567372 442 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AP001180.3-201ENST00000582221 145 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 MRPS35P3-201ENST00000603189 709 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC128687.2-201ENST00000609657 566 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC012314.7-201ENST00000619693 93 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC011330.2-201ENST00000621680 635 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC073530.2-201ENST00000623987 261 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC009093.8-201ENST00000641769 292 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC008725.1-201ENST00000605123 2263 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 AC024560.2-201ENST00000507981 1497 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 SEPT7P7-201ENST00000420492 1301 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 SNORA5A-201ENST00000384111 134 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 RNU6-761P-201ENST00000384148 107 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 Y_RNA.465-201ENST00000384293 102 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AL133384.1-201ENST00000412744 351 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 OR4F13P-201ENST00000428478 931 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 RPL31P54-201ENST00000429803 370 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 TPTE2P3-201ENST00000441562 1189 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 RANP8-201ENST00000444720 713 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 RNF138P1-201ENST00000502765 546 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC025554.1-201ENST00000505641 188 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC034244.1-201ENST00000507687 207 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 SNORA48.10-201ENST00000516965 160 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 OR4A12P-201ENST00000530847 918 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC007599.1-201ENST00000568688 1174 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC061975.8-201ENST00000587058 721 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC091057.2-201ENST00000602594 792 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms