Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL353597.2-202ENST00000434901 373 ntBASIC4.07□□□□□ -1.76
MSH6P52701 AL035551.1-201ENST00000446931 348 ntBASIC4.07□□□□□ -1.76
MSH6P52701 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.07□□□□□ -1.76
MSH6P52701 HMGN1P18-201ENST00000457642 277 ntBASIC4.07□□□□□ -1.76
MSH6P52701 EIF2S2P4-201ENST00000461070 984 ntBASIC4.07□□□□□ -1.76
MSH6P52701 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.07□□□□□ -1.76
MSH6P52701 AP000873.5-201ENST00000533906 236 ntBASIC4.07□□□□□ -1.76
MSH6P52701 RFPL1S-203ENST00000539579 330 ntBASIC4.07□□□□□ -1.76
MSH6P52701 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.07□□□□□ -1.76
MSH6P52701 AC004825.2-201ENST00000616634 455 ntBASIC4.07□□□□□ -1.76
MSH6P52701 AC092159.4-201ENST00000624944 550 ntBASIC4.07□□□□□ -1.76
MSH6P52701 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
MSH6P52701 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSH6P52701 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH6P52701 AC009487.2-201ENST00000420969 6821 ntBASIC4.07□□□□□ -1.76
MSH6P52701 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSH6P52701 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSH6P52701 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH6P52701 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH6P52701 AC017002.4-201ENST00000604721 1525 ntBASIC4.06□□□□□ -1.76
MSH6P52701 U8.2-201ENST00000363156 134 ntBASIC4.06□□□□□ -1.76
MSH6P52701 MIR9-1-201ENST00000385198 89 ntBASIC4.06□□□□□ -1.76
MSH6P52701 RN7SKP285-201ENST00000410137 318 ntBASIC4.06□□□□□ -1.76
MSH6P52701 SRIP2-201ENST00000428470 166 ntBASIC4.06□□□□□ -1.76
MSH6P52701 AC093716.1-201ENST00000435923 377 ntBASIC4.06□□□□□ -1.76
MSH6P52701 AP000936.2-201ENST00000447151 681 ntBASIC4.06□□□□□ -1.76
MSH6P52701 WASF1P1-201ENST00000447560 1131 ntBASIC4.06□□□□□ -1.76
MSH6P52701 snoU13.15-201ENST00000459407 104 ntBASIC4.06□□□□□ -1.76
MSH6P52701 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.06□□□□□ -1.76
MSH6P52701 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSH6P52701 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.06□□□□□ -1.76
MSH6P52701 IGKV2D-23-201ENST00000518179 286 ntBASIC4.06□□□□□ -1.76
MSH6P52701 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH6P52701 AC090819.1-201ENST00000523800 1111 ntBASIC4.06□□□□□ -1.76
MSH6P52701 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH6P52701 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH6P52701 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
MSH6P52701 AC068446.3-201ENST00000555285 382 ntBASIC4.06□□□□□ -1.76
MSH6P52701 SNORD53-201ENST00000579969 78 ntBASIC4.06□□□□□ -1.76
MSH6P52701 BMS1P7-201ENST00000602440 1052 ntBASIC4.06□□□□□ -1.76
MSH6P52701 AC015871.2-201ENST00000603605 948 ntBASIC4.06□□□□□ -1.76
MSH6P52701 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH6P52701 AC092628.2-201ENST00000622492 339 ntBASIC4.06□□□□□ -1.76
MSH6P52701 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH6P52701 OR11H5P-202ENST00000641612 1325 ntBASIC4.06□□□□□ -1.76
MSH6P52701 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH6P52701 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC4.06□□□□□ -1.76
MSH6P52701 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSH6P52701 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSH6P52701 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC4.05□□□□□ -1.76
MSH6P52701 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH6P52701 RNU1-75P-201ENST00000347264 129 ntBASIC4.05□□□□□ -1.76
MSH6P52701 AC233981.1-201ENST00000423224 461 ntBASIC4.05□□□□□ -1.76
MSH6P52701 ISCA1P2-201ENST00000438679 421 ntBASIC4.05□□□□□ -1.76
MSH6P52701 HMGB1P18-201ENST00000438801 619 ntBASIC4.05□□□□□ -1.76
MSH6P52701 ARL5AP3-201ENST00000439327 386 ntBASIC4.05□□□□□ -1.76
MSH6P52701 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH6P52701 NIPA2P5-201ENST00000452282 464 ntBASIC4.05□□□□□ -1.76
MSH6P52701 AC006539.3-201ENST00000454258 129 ntBASIC4.05□□□□□ -1.76
MSH6P52701 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH6P52701 AC108078.3-201ENST00000502633 489 ntBASIC4.05□□□□□ -1.76
MSH6P52701 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.05□□□□□ -1.76
MSH6P52701 VTA1P2-201ENST00000520205 911 ntBASIC4.05□□□□□ -1.76
MSH6P52701 OR8X1P-201ENST00000534542 869 ntBASIC4.05□□□□□ -1.76
MSH6P52701 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC4.05□□□□□ -1.76
MSH6P52701 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.05□□□□□ -1.76
MSH6P52701 AC022387.2-201ENST00000604050 448 ntBASIC4.05□□□□□ -1.76
MSH6P52701 HMGB1P51-201ENST00000605166 638 ntBASIC4.05□□□□□ -1.76
MSH6P52701 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH6P52701 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.05□□□□□ -1.76
MSH6P52701 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
MSH6P52701 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
MSH6P52701 Z73965.1-201ENST00000623412 2297 ntBASIC4.05□□□□□ -1.76
MSH6P52701 AC095050.2-201ENST00000510748 1458 ntBASIC4.05□□□□□ -1.76
MSH6P52701 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH6P52701 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
MSH6P52701 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSH6P52701 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH6P52701 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH6P52701 RPS12P23-201ENST00000419579 400 ntBASIC4.04□□□□□ -1.76
MSH6P52701 AL356806.1-201ENST00000422524 916 ntBASIC4.04□□□□□ -1.76
MSH6P52701 RPS20P5-201ENST00000434808 360 ntBASIC4.04□□□□□ -1.76
MSH6P52701 Z99127.2-201ENST00000441426 334 ntBASIC4.04□□□□□ -1.76
MSH6P52701 RPS12P18-201ENST00000442381 270 ntBASIC4.04□□□□□ -1.76
MSH6P52701 VN1R48P-201ENST00000448149 1036 ntBASIC4.04□□□□□ -1.76
MSH6P52701 AC243772.1-201ENST00000451620 410 ntBASIC4.04□□□□□ -1.76
MSH6P52701 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH6P52701 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH6P52701 AC006445.2-201ENST00000510061 472 ntBASIC4.04□□□□□ -1.76
MSH6P52701 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH6P52701 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.04□□□□□ -1.76
MSH6P52701 AC104997.1-201ENST00000519761 717 ntBASIC4.04□□□□□ -1.76
MSH6P52701 AL109741.3-201ENST00000561748 592 ntBASIC4.04□□□□□ -1.76
MSH6P52701 MTATP6P25-201ENST00000574491 261 ntBASIC4.04□□□□□ -1.76
MSH6P52701 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.04□□□□□ -1.76
MSH6P52701 AL158827.2-201ENST00000602494 330 ntBASIC4.04□□□□□ -1.76
MSH6P52701 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH6P52701 AC005021.1-201ENST00000608730 355 ntBASIC4.04□□□□□ -1.76
MSH6P52701 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH6P52701 AL691447.3-201ENST00000635020 330 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms