Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.55□□□□□ -1.84
BRCA1P38398 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.55□□□□□ -1.84
BRCA1P38398 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.55□□□□□ -1.84
BRCA1P38398 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.55□□□□□ -1.84
BRCA1P38398 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
BRCA1P38398 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
BRCA1P38398 AL365400.2-201ENST00000605604 902 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.55□□□□□ -1.84
BRCA1P38398 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.55□□□□□ -1.84
BRCA1P38398 AL353743.4-201ENST00000422653 1547 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 AC010733.2-201ENST00000589496 5702 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.54□□□□□ -1.84
BRCA1P38398 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
BRCA1P38398 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
BRCA1P38398 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.54□□□□□ -1.84
BRCA1P38398 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
BRCA1P38398 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
BRCA1P38398 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.54□□□□□ -1.84
BRCA1P38398 AL357520.1-201ENST00000441557 453 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.54□□□□□ -1.84
BRCA1P38398 AL157827.1-201ENST00000447622 132 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.54□□□□□ -1.84
BRCA1P38398 AC117522.3-201ENST00000507974 584 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 AC008413.1-201ENST00000511864 177 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 IGKV3-31-201ENST00000523109 329 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
BRCA1P38398 SERPINE4P-201ENST00000554978 281 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 MIR4738-201ENST00000579134 87 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
BRCA1P38398 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.54□□□□□ -1.84
BRCA1P38398 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.54□□□□□ -1.84
BRCA1P38398 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.54□□□□□ -1.84
BRCA1P38398 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
BRCA1P38398 MIR423-201ENST00000362201 94 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 RNA5SP68-201ENST00000363885 119 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 RPL23AP48-201ENST00000406913 488 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 RNA5SP31-201ENST00000411144 127 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 SEC63P1-201ENST00000425785 1258 ntBASIC3.54□□□□□ -1.84
BRCA1P38398 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.54□□□□□ -1.84
BRCA1P38398 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.54□□□□□ -1.84
BRCA1P38398 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.54□□□□□ -1.84
BRCA1P38398 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.54□□□□□ -1.84
BRCA1P38398 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
BRCA1P38398 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
BRCA1P38398 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.53□□□□□ -1.84
BRCA1P38398 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
BRCA1P38398 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
BRCA1P38398 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.53□□□□□ -1.84
BRCA1P38398 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
BRCA1P38398 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
BRCA1P38398 AP002088.1-201ENST00000382740 395 ntBASIC3.53□□□□□ -1.84
BRCA1P38398 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.53□□□□□ -1.84
BRCA1P38398 RPL34P26-201ENST00000445636 354 ntBASIC3.53□□□□□ -1.84
BRCA1P38398 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.53□□□□□ -1.84
BRCA1P38398 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.53□□□□□ -1.84
BRCA1P38398 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.53□□□□□ -1.84
BRCA1P38398 ATP5F1P7-201ENST00000567330 760 ntBASIC3.53□□□□□ -1.84
BRCA1P38398 MIR4716-201ENST00000579628 84 ntBASIC3.53□□□□□ -1.84
BRCA1P38398 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.53□□□□□ -1.84
BRCA1P38398 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
BRCA1P38398 CFTRP2-201ENST00000634304 199 ntBASIC3.53□□□□□ -1.84
BRCA1P38398 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
BRCA1P38398 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
BRCA1P38398 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.52□□□□□ -1.85
BRCA1P38398 LINC01355-201ENST00000566551 5444 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
BRCA1P38398 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
BRCA1P38398 RNU6-891P-201ENST00000384280 111 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 RANP4-201ENST00000413361 655 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC023050.1-201ENST00000498198 304 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC005351.1-201ENST00000511152 786 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 ARL2BPP6-201ENST00000512757 439 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC018797.3-201ENST00000513388 1241 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.52□□□□□ -1.85
BRCA1P38398 MTCO2P22-201ENST00000603246 681 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
BRCA1P38398 AC241585.2-209ENST00000638217 143 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
BRCA1P38398 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.52□□□□□ -1.85
BRCA1P38398 U8.2-201ENST00000363156 134 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 RNA5SP508-201ENST00000411327 119 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 RAP1BP1-201ENST00000412709 553 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AL450263.2-201ENST00000439400 589 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.52□□□□□ -1.85
BRCA1P38398 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.52□□□□□ -1.85
BRCA1P38398 AL590639.1-201ENST00000456484 337 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC010401.1-201ENST00000463867 348 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 OR52A4P-203ENST00000498233 1014 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.52□□□□□ -1.85
BRCA1P38398 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.52□□□□□ -1.85
BRCA1P38398 RNA5SP217-201ENST00000515959 91 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 RNU6-991P-201ENST00000516168 107 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.52□□□□□ -1.85
BRCA1P38398 AP003122.3-201ENST00000526316 255 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 HMGB3P26-201ENST00000560051 582 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
BRCA1P38398 AL158827.2-201ENST00000602494 330 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC098826.3-201ENST00000603823 466 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AL691447.3-201ENST00000635020 330 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 AC009452.1-201ENST00000640823 606 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms