Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 BNIP3P38-201ENST00000601117 544 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AC124312.4-201ENST00000605533 310 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AL355816.1-201ENST00000607951 118 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC9P31274 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HOXC9P31274 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
HOXC9P31274 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 DDX18P3-201ENST00000404856 2007 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 GNG5P1-201ENST00000255500 204 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HOXC9P31274 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXC9P31274 MIR448-201ENST00000362131 111 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 RNU4-68P-201ENST00000364314 141 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 OR1L1-202ENST00000373686 1083 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HOXC9P31274 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 RNA5SP39-201ENST00000411245 120 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 RNU2-6P-201ENST00000411404 190 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 SETP15-201ENST00000412724 337 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXC9P31274 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXC9P31274 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXC9P31274 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXC9P31274 RPL12P46-201ENST00000436610 195 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 HMGB3P6-201ENST00000444896 598 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 MTND1P33-201ENST00000446251 917 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXC9P31274 AC097262.1-201ENST00000452559 548 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXC9P31274 AP001486.1-201ENST00000463339 476 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXC9P31274 AC112198.1-201ENST00000505369 1220 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AC110794.1-201ENST00000505816 425 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXC9P31274 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXC9P31274 Y_RNA.717-201ENST00000517106 92 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AC026407.1-201ENST00000518369 204 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 MYL12AP1-201ENST00000518490 515 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXC9P31274 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXC9P31274 AC018552.3-201ENST00000567416 561 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 MIR5708-201ENST00000579723 85 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AC234772.3-201ENST00000602277 528 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AL137843.1-201ENST00000605078 385 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXC9P31274 AC018926.3-201ENST00000618841 406 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 AL121895.2-201ENST00000619558 447 ntBASIC4.5□□□□□ -1.69
HOXC9P31274 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
HOXC9P31274 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXC9P31274 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HOXC9P31274 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC9P31274 TNPO1P3-201ENST00000436471 2662 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXC9P31274 AL445437.1-201ENST00000623157 3087 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXC9P31274 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
HOXC9P31274 AC011155.1-201ENST00000316512 456 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 RNU1-87P-201ENST00000363727 170 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 GSTA8P-201ENST00000404253 637 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 Z99755.1-201ENST00000414048 380 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXC9P31274 AC027644.1-201ENST00000419595 298 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXC9P31274 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXC9P31274 EEF1A1P39-201ENST00000440791 250 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXC9P31274 RPL37P3-201ENST00000456825 293 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AC005410.1-202ENST00000460347 485 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AP001992.1-205ENST00000462248 379 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 RPL5P30-201ENST00000465511 891 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 PRDX3P4-201ENST00000470828 747 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXC9P31274 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXC9P31274 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXC9P31274 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.49□□□□□ -1.69
HOXC9P31274 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXC9P31274 AC023632.1-201ENST00000518463 375 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXC9P31274 AC008562.1-201ENST00000521763 330 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 OR5AP1P-201ENST00000529730 940 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXC9P31274 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.49□□□□□ -1.69
HOXC9P31274 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.49□□□□□ -1.69
HOXC9P31274 SETP1-201ENST00000556014 845 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXC9P31274 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms