Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 MTND5P28-201ENST00000438005 1594 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 Y_RNA.234-201ENST00000364409 97 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 Y_RNA.255-201ENST00000364581 97 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 SNORA32.2-201ENST00000384049 122 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 RNU6-510P-201ENST00000391239 108 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 RPL32P23-201ENST00000397237 405 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC092832.1-201ENST00000422934 400 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC018644.1-201ENST00000429934 551 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 BX276092.6-201ENST00000430476 250 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ATP5HP2-201ENST00000433885 485 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 GSTM5P1-201ENST00000434751 660 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 BX276092.8-201ENST00000455722 250 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 snoU13.8-201ENST00000458890 104 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ABCC13-202ENST00000463099 3842 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC007537.2-201ENST00000472093 511 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC078785.3-201ENST00000476607 425 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC055855.1-201ENST00000489563 579 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 RPL38P4-201ENST00000502376 214 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AK3P4-201ENST00000504283 583 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 BTF3P12-201ENST00000519620 469 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 PSMA2P1-201ENST00000526365 646 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC087241.2-201ENST00000535801 324 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 MIR4489-201ENST00000578869 62 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 FKBP1AP1-201ENST00000594588 318 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC093913.1-201ENST00000614178 329 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 MIR6837-201ENST00000620884 64 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 AC138965.3-201ENST00000623875 498 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 STX3-208ENST00000641815 3236 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 OR4G1P-203ENST00000641984 1631 ntBASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD1Q96NR3 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AC007938.2-201ENST00000604666 2634 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 RNU6-97P-201ENST00000363387 104 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 SNORD56.6-201ENST00000384569 71 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AL133388.1-201ENST00000404509 287 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AC012065.2-201ENST00000421295 375 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 SRSF1P1-201ENST00000424058 520 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 SRIP2-201ENST00000428470 166 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 MTND6P18-201ENST00000439477 513 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AC108734.1-201ENST00000439549 399 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AC073465.2-201ENST00000440938 498 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 MTCYBP6-201ENST00000441810 138 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AL356010.1-201ENST00000456364 102 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 RN7SL197P-201ENST00000466981 299 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 RN7SL447P-201ENST00000494711 245 ntBASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD1Q96NR3 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms