Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.71□□□□□ -1.98
CHD3Q12873 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.71□□□□□ -1.98
CHD3Q12873 AC010809.3-201ENST00000621310 641 ntBASIC2.71□□□□□ -1.98
CHD3Q12873 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CHD3Q12873 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC2.71□□□□□ -1.98
CHD3Q12873 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.71□□□□□ -1.98
CHD3Q12873 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.71□□□□□ -1.98
CHD3Q12873 PWAR6-201ENST00000552334 4618 ntBASIC2.71□□□□□ -1.98
CHD3Q12873 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
CHD3Q12873 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
CHD3Q12873 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CHD3Q12873 AC117529.2-201ENST00000512159 2068 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CHD3Q12873 BTF3P9-201ENST00000418784 283 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 MTCO1P52-201ENST00000433928 531 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC2.7□□□□□ -1.98
CHD3Q12873 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC2.7□□□□□ -1.98
CHD3Q12873 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.7□□□□□ -1.98
CHD3Q12873 AC108078.3-201ENST00000502633 489 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC2.7□□□□□ -1.98
CHD3Q12873 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.7□□□□□ -1.98
CHD3Q12873 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.7□□□□□ -1.98
CHD3Q12873 AC245166.1-201ENST00000521012 253 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC2.7□□□□□ -1.98
CHD3Q12873 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.7□□□□□ -1.98
CHD3Q12873 NRBF2P5-201ENST00000603087 788 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 AC006557.5-201ENST00000603126 811 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 AL137790.1-201ENST00000634283 177 ntBASIC2.7□□□□□ -1.98
CHD3Q12873 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
CHD3Q12873 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.7□□□□□ -1.98
CHD3Q12873 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
CHD3Q12873 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CHD3Q12873 AC093151.1-201ENST00000427711 313 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.69□□□□□ -1.98
CHD3Q12873 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC2.69□□□□□ -1.98
CHD3Q12873 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC2.69□□□□□ -1.98
CHD3Q12873 PTGES3P5-201ENST00000455109 434 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 NECAP1P2-201ENST00000455668 727 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 SNORD108-201ENST00000459332 71 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.69□□□□□ -1.98
CHD3Q12873 RN7SKP132-201ENST00000516001 208 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC2.69□□□□□ -1.98
CHD3Q12873 UBL5P2-201ENST00000583788 219 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.69□□□□□ -1.98
CHD3Q12873 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CHD3Q12873 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CHD3Q12873 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CHD3Q12873 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
CHD3Q12873 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
CHD3Q12873 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
CHD3Q12873 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.69□□□□□ -1.98
CHD3Q12873 MTND5P19-201ENST00000424872 1794 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AL136360.1-201ENST00000503377 1900 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 SNORA81-201ENST00000408493 178 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 RPL32P35-201ENST00000415214 394 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AC245291.1-201ENST00000419501 328 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AL139281.1-201ENST00000422120 335 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 B3GNT2P1-201ENST00000434960 952 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 VN1R48P-201ENST00000448149 1036 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.69□□□□□ -1.98
CHD3Q12873 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC2.69□□□□□ -1.98
CHD3Q12873 MTCO1P30-201ENST00000515244 580 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 RN7SKP282-201ENST00000516824 299 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.69□□□□□ -1.98
CHD3Q12873 BNIP3P10-201ENST00000605360 577 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AP003485.2-201ENST00000623636 610 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 AC010149.2-201ENST00000637608 315 ntBASIC2.69□□□□□ -1.98
CHD3Q12873 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.69□□□□□ -1.98
CHD3Q12873 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CHD3Q12873 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CHD3Q12873 SEPT7P2-202ENST00000398921 823 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 RNU2-37P-201ENST00000410695 177 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.68□□□□□ -1.98
CHD3Q12873 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.68□□□□□ -1.98
CHD3Q12873 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CHD3Q12873 TMEM248P1-201ENST00000510579 951 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 COX6B1P6-201ENST00000522347 255 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.68□□□□□ -1.98
CHD3Q12873 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC2.68□□□□□ -1.98
CHD3Q12873 AL121839.1-201ENST00000556233 1185 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.68□□□□□ -1.98
CHD3Q12873 ZNF192P1-203ENST00000565888 810 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 AC005951.1-201ENST00000576706 485 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 AC006270.2-201ENST00000578523 652 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC2.68□□□□□ -1.98
CHD3Q12873 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.68□□□□□ -1.98
CHD3Q12873 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
CHD3Q12873 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.68□□□□□ -1.98
CHD3Q12873 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CHD3Q12873 SNORA71.1-201ENST00000364523 117 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 RNA5SP167-201ENST00000365461 116 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
CHD3Q12873 AL139413.1-201ENST00000421309 217 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 AL138785.1-201ENST00000425821 331 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 MTND2P2-201ENST00000434633 945 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CHD3Q12873 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.68□□□□□ -1.98
CHD3Q12873 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms