Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RPL23AP71-201ENST00000470966 469 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 MTCO3P35-201ENST00000485582 781 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXC9P31274 RN7SKP265-201ENST00000516448 223 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 RN7SKP83-201ENST00000516512 178 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 IGJP1-201ENST00000522682 475 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 OR4R3P-201ENST00000525084 838 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC124293.1-201ENST00000530034 493 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC026333.2-201ENST00000542164 106 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.55□□□□□ -1.68
HOXC9P31274 AL133457.1-201ENST00000564251 987 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 MIR4325-201ENST00000583049 90 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXC9P31274 AL139395.1-201ENST00000603662 160 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 ELOCP34-201ENST00000604436 327 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC006386.1-201ENST00000619436 415 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 CR392039.4-201ENST00000624968 501 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC092608.3-201ENST00000625017 386 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC006927.4-201ENST00000639187 543 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 ZNF663P-202ENST00000641770 1131 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXC9P31274 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXC9P31274 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXC9P31274 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXC9P31274 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXC9P31274 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
HOXC9P31274 AC138393.1-206ENST00000540997 1886 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXC9P31274 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXC9P31274 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXC9P31274 RNU6-283P-201ENST00000364788 107 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 RNU4-22P-201ENST00000411058 166 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 HMGN1P24-201ENST00000412282 298 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 OR6C64P-201ENST00000419708 825 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 RPL7P44-201ENST00000424827 742 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 IFNNP1-201ENST00000429219 553 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 MRPS18BP2-201ENST00000434310 759 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXC9P31274 MTCYBP42-201ENST00000444653 1130 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXC9P31274 AL671855.1-201ENST00000446875 1203 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 TPMTP4-201ENST00000450749 678 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 PTGES3P5-201ENST00000455109 434 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 CCDC75P1-201ENST00000469247 791 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 RPS26P3-201ENST00000470205 348 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 AC004057.1-201ENST00000485827 348 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 RPL7P38-201ENST00000488396 739 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 RPL7P23-201ENST00000493874 747 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXC9P31274 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXC9P31274 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXC9P31274 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXC9P31274 AC119751.5-201ENST00000514077 770 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 RN7SKP283-201ENST00000517197 270 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 MTCO3P15-201ENST00000526563 574 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXC9P31274 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC4.54□□□□□ -1.68
HOXC9P31274 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXC9P31274 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXC9P31274 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXC9P31274 DUXAP6-201ENST00000553858 601 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXC9P31274 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.54□□□□□ -1.68
HOXC9P31274 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXC9P31274 DPRXP4-201ENST00000578053 568 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXC9P31274 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXC9P31274 VN1R84P-201ENST00000593697 235 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 AC011816.2-201ENST00000607089 556 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXC9P31274 AC087683.2-201ENST00000611384 326 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.54□□□□□ -1.68
HOXC9P31274 AC006963.1-201ENST00000624003 1052 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXC9P31274 AC119744.1-201ENST00000454746 1715 ntBASIC4.54□□□□□ -1.68
HOXC9P31274 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
HOXC9P31274 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXC9P31274 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXC9P31274 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
HOXC9P31274 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXC9P31274 Y_RNA.472-201ENST00000384322 102 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXC9P31274 RAC1P8-201ENST00000427086 527 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 NANOGP6-201ENST00000429190 847 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 ELOCP11-201ENST00000436690 332 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 ELOCP16-201ENST00000444494 332 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 NPM1P13-201ENST00000452663 865 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 AC134050.1-201ENST00000495088 933 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXC9P31274 HMGB1P21-201ENST00000502313 581 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXC9P31274 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXC9P31274 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXC9P31274 COX6B1P6-201ENST00000522347 255 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 DEFB130C-202ENST00000530001 230 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXC9P31274 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms