Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC124947.2-202ENST00000552735 133 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 RN7SL802P-201ENST00000577858 299 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 RPL27-207ENST00000590864 569 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 COX6CP4-201ENST00000605798 228 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AL049794.2-201ENST00000616301 365 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC068722.2-201ENST00000618734 544 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC073534.2-201ENST00000620377 381 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 AP006248.2-201ENST00000623309 592 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AL157786.1-207ENST00000627771 695 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC099654.13-201ENST00000639774 207 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 AC000123.3-201ENST00000624029 4975 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 AL031119.1-201ENST00000404707 1879 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC087190.4-201ENST00000574616 8334 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 MED23-203ENST00000368058 4576 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 ANAPC1P1-201ENST00000426186 2145 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 KPNA2P2-201ENST00000419546 1489 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 AL031679.1-201ENST00000400616 525 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 IL6-206ENST00000407492 926 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 MIR1305-201ENST00000408300 86 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD3P31249 RNU2-21P-201ENST00000410368 188 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 Y_RNA.608-201ENST00000410647 95 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 OR8G2P-201ENST00000412796 908 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AC013429.2-201ENST00000418798 781 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXD3P31249 AL592293.2-201ENST00000422292 996 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AL138785.1-201ENST00000425821 331 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 BX890604.2-201ENST00000427883 474 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 CEACAMP1-201ENST00000434624 1035 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AL450023.3-201ENST00000440592 271 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 OR1H1P-201ENST00000448731 937 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 ARPC3P5-201ENST00000448802 534 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AC104073.1-201ENST00000451988 151 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
HOXD3P31249 AC012170.1-201ENST00000495139 359 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD3P31249 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD3P31249 ENPP7P11-201ENST00000505915 627 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AC022447.3-201ENST00000506865 495 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXD3P31249 AC108064.1-201ENST00000513791 460 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 NRON-201ENST00000517270 370 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 COX6CP8-201ENST00000522620 226 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AP003122.4-201ENST00000530980 758 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXD3P31249 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD3P31249 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD3P31249 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD3P31249 BBIP1P1-201ENST00000602999 279 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AP001521.2-201ENST00000608772 546 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AC090970.3-201ENST00000612566 866 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AP001506.1-201ENST00000615444 211 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AL158209.2-201ENST00000619266 216 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AC068880.5-201ENST00000624331 290 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 AC244258.1-201ENST00000637553 1071 ntBASIC3.8□□□□□ -1.8
HOXD3P31249 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXD3P31249 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD3P31249 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXD3P31249 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 USP45-204ENST00000369233 2514 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXD3P31249 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HOXD3P31249 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HOXD3P31249 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD3P31249 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms