Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.05□□□□□ -1.92
USF1P22415 AC106734.1-201ENST00000568646 663 ntBASIC3.05□□□□□ -1.92
USF1P22415 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.05□□□□□ -1.92
USF1P22415 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.05□□□□□ -1.92
USF1P22415 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.05□□□□□ -1.92
USF1P22415 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.05□□□□□ -1.92
USF1P22415 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USF1P22415 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.05□□□□□ -1.92
USF1P22415 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.05□□□□□ -1.92
USF1P22415 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USF1P22415 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.05□□□□□ -1.92
USF1P22415 AC096586.1-201ENST00000610267 561 ntBASIC3.05□□□□□ -1.92
USF1P22415 AL355365.1-201ENST00000616480 294 ntBASIC3.05□□□□□ -1.92
USF1P22415 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USF1P22415 U73479.1-201ENST00000618062 168 ntBASIC3.05□□□□□ -1.92
USF1P22415 AC069209.1-201ENST00000619282 651 ntBASIC3.05□□□□□ -1.92
USF1P22415 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
USF1P22415 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.05□□□□□ -1.92
USF1P22415 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.05□□□□□ -1.92
USF1P22415 AL356118.1-201ENST00000635272 1078 ntBASIC3.05□□□□□ -1.92
USF1P22415 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.05□□□□□ -1.92
USF1P22415 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
USF1P22415 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USF1P22415 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USF1P22415 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USF1P22415 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USF1P22415 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USF1P22415 AL592494.2-201ENST00000425455 1548 ntBASIC3.04□□□□□ -1.92
USF1P22415 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.04□□□□□ -1.92
USF1P22415 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
USF1P22415 AC021755.1-201ENST00000559747 1447 ntBASIC3.04□□□□□ -1.92
USF1P22415 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USF1P22415 ZNF542P-204ENST00000482727 1305 ntBASIC3.04□□□□□ -1.92
USF1P22415 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.04□□□□□ -1.92
USF1P22415 MFSD8-213ENST00000641134 1327 ntBASIC3.04□□□□□ -1.92
USF1P22415 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
USF1P22415 SNORA7.2-201ENST00000364446 145 ntBASIC3.04□□□□□ -1.92
USF1P22415 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
USF1P22415 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.04□□□□□ -1.92
USF1P22415 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USF1P22415 RNU6-1151P-201ENST00000384684 107 ntBASIC3.04□□□□□ -1.92
USF1P22415 MIR607-201ENST00000385241 96 ntBASIC3.04□□□□□ -1.92
USF1P22415 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
USF1P22415 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USF1P22415 AC127526.1-201ENST00000417526 366 ntBASIC3.04□□□□□ -1.92
USF1P22415 AC245054.1-201ENST00000420944 258 ntBASIC3.04□□□□□ -1.92
USF1P22415 RPL21P109-201ENST00000422213 475 ntBASIC3.04□□□□□ -1.92
USF1P22415 VN1R42P-201ENST00000424651 344 ntBASIC3.04□□□□□ -1.92
USF1P22415 RPL36P19-201ENST00000430744 301 ntBASIC3.04□□□□□ -1.92
USF1P22415 RPL21P112-201ENST00000434403 463 ntBASIC3.04□□□□□ -1.92
USF1P22415 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.04□□□□□ -1.92
USF1P22415 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC3.04□□□□□ -1.92
USF1P22415 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.04□□□□□ -1.92
USF1P22415 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.04□□□□□ -1.92
USF1P22415 RPL12P26-201ENST00000452430 487 ntBASIC3.04□□□□□ -1.92
USF1P22415 AC007967.1-201ENST00000455422 1159 ntBASIC3.04□□□□□ -1.92
USF1P22415 BX248409.1-201ENST00000455497 255 ntBASIC3.04□□□□□ -1.92
USF1P22415 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.04□□□□□ -1.92
USF1P22415 AC004801.2-202ENST00000463559 283 ntBASIC3.04□□□□□ -1.92
USF1P22415 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC3.04□□□□□ -1.92
USF1P22415 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.04□□□□□ -1.92
USF1P22415 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.04□□□□□ -1.92
USF1P22415 RPL23AP73-201ENST00000492507 471 ntBASIC3.04□□□□□ -1.92
USF1P22415 AC010468.3-201ENST00000508225 458 ntBASIC3.04□□□□□ -1.92
USF1P22415 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.04□□□□□ -1.92
USF1P22415 RNA5SP208-201ENST00000516156 78 ntBASIC3.04□□□□□ -1.92
USF1P22415 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.04□□□□□ -1.92
USF1P22415 AC104229.1-201ENST00000561364 255 ntBASIC3.04□□□□□ -1.92
USF1P22415 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.04□□□□□ -1.92
USF1P22415 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.04□□□□□ -1.92
USF1P22415 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.04□□□□□ -1.92
USF1P22415 VN1R88P-201ENST00000596787 292 ntBASIC3.04□□□□□ -1.92
USF1P22415 SNRPGP15-201ENST00000600149 222 ntBASIC3.04□□□□□ -1.92
USF1P22415 RMST_10.1-201ENST00000616309 154 ntBASIC3.04□□□□□ -1.92
USF1P22415 AC048347.1-201ENST00000624621 427 ntBASIC3.04□□□□□ -1.92
USF1P22415 AP001002.2-201ENST00000625137 386 ntBASIC3.04□□□□□ -1.92
USF1P22415 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
USF1P22415 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.04□□□□□ -1.92
USF1P22415 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
USF1P22415 AC007823.1-201ENST00000569932 1566 ntBASIC3.04□□□□□ -1.92
USF1P22415 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.04□□□□□ -1.92
USF1P22415 AC091152.2-201ENST00000591628 2569 ntBASIC3.04□□□□□ -1.92
USF1P22415 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
USF1P22415 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
USF1P22415 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
USF1P22415 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
USF1P22415 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.03□□□□□ -1.92
USF1P22415 MIR490-201ENST00000384865 128 ntBASIC3.03□□□□□ -1.92
USF1P22415 MIR525-201ENST00000384978 85 ntBASIC3.03□□□□□ -1.92
USF1P22415 SOD2P1-201ENST00000396543 562 ntBASIC3.03□□□□□ -1.92
USF1P22415 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
USF1P22415 Z92545.1-201ENST00000411782 234 ntBASIC3.03□□□□□ -1.92
USF1P22415 RPL21P110-201ENST00000433345 446 ntBASIC3.03□□□□□ -1.92
USF1P22415 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.03□□□□□ -1.92
USF1P22415 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.03□□□□□ -1.92
USF1P22415 SKP1P1-201ENST00000438081 489 ntBASIC3.03□□□□□ -1.92
USF1P22415 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.03□□□□□ -1.92
USF1P22415 AC099563.1-201ENST00000456086 418 ntBASIC3.03□□□□□ -1.92
USF1P22415 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.03□□□□□ -1.92
USF1P22415 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms