Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 RPL36P19-201ENST00000430744 301 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC010881.1-201ENST00000433830 235 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 MTCYBP31-201ENST00000438855 1122 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 RPL6P9-201ENST00000466502 859 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC026402.1-201ENST00000513642 170 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 SOD1P3-201ENST00000518682 454 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC008011.1-201ENST00000545989 227 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC006960.3-201ENST00000561845 705 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC106785.1-201ENST00000565935 262 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC006270.2-201ENST00000578523 652 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AL451086.1-201ENST00000605596 223 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 AF129408.1-201ENST00000608767 431 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 MIR6798-201ENST00000612887 67 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 VN1R7P-201ENST00000619242 903 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC004808.1-201ENST00000627671 721 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC138649.5-201ENST00000637456 137 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.89
SKA3Q8IX90 AP001148.1-201ENST00000624124 2359 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 AC111188.2-201ENST00000529697 1387 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 RNU6-619P-201ENST00000365146 108 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 HSPE1P8-201ENST00000406997 288 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 AC008280.1-201ENST00000418851 412 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 RPL31P45-201ENST00000419532 356 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 AL354692.1-201ENST00000423044 315 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 SDR42E1P3-201ENST00000438345 502 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 FCF1P6-201ENST00000456841 595 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 AC008837.1-201ENST00000511513 412 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 MTND4LP31-201ENST00000514859 294 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 RNU6-488P-201ENST00000515918 99 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 RN7SKP209-201ENST00000516888 304 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 RN7SKP277-201ENST00000516895 283 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 RN7SKP234-201ENST00000517173 224 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 AC087897.1-201ENST00000550134 156 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 MIR4504-201ENST00000577413 92 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 MIR5187-201ENST00000583479 76 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 LLPHP1-201ENST00000603571 367 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 RPAP2P1-201ENST00000603626 1168 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 AC018754.1-201ENST00000607486 925 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 AP000238.1-201ENST00000608759 426 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 MIR8058-201ENST00000615737 89 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 XIST_intron.1-201ENST00000619444 68 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 FAM157B-203ENST00000639350 358 ntBASIC3.27□□□□□ -1.89
SKA3Q8IX90 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.27□□□□□ -1.89
SKA3Q8IX90 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA3Q8IX90 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SKA3Q8IX90 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms