Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.69□□□□□ -1.5
LIG3P49916 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.69□□□□□ -1.5
LIG3P49916 AC079075.1-201ENST00000559543 878 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AC087477.6-201ENST00000559595 843 ntBASIC5.69□□□□□ -1.5
LIG3P49916 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.69□□□□□ -1.5
LIG3P49916 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.69□□□□□ -1.5
LIG3P49916 AC037471.2-201ENST00000564941 598 ntBASIC5.69□□□□□ -1.5
LIG3P49916 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.69□□□□□ -1.5
LIG3P49916 AC060771.1-201ENST00000582031 164 ntBASIC5.69□□□□□ -1.5
LIG3P49916 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.69□□□□□ -1.5
LIG3P49916 AC104695.2-201ENST00000605056 775 ntBASIC5.69□□□□□ -1.5
LIG3P49916 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIG3P49916 AC022106.2-201ENST00000620114 757 ntBASIC5.69□□□□□ -1.5
LIG3P49916 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LIG3P49916 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG3P49916 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
LIG3P49916 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG3P49916 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG3P49916 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
LIG3P49916 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG3P49916 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.69□□□□□ -1.5
LIG3P49916 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG3P49916 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.68□□□□□ -1.5
LIG3P49916 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
LIG3P49916 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.68□□□□□ -1.5
LIG3P49916 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.68□□□□□ -1.5
LIG3P49916 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 AC092681.1-201ENST00000297369 291 ntBASIC5.68□□□□□ -1.5
LIG3P49916 SNORD81.2-201ENST00000365153 76 ntBASIC5.68□□□□□ -1.5
LIG3P49916 RNU6-359P-201ENST00000365466 108 ntBASIC5.68□□□□□ -1.5
LIG3P49916 SNORD82-201ENST00000365530 70 ntBASIC5.68□□□□□ -1.5
LIG3P49916 RNA5SP30-201ENST00000365552 115 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AL354719.1-201ENST00000406535 843 ntBASIC5.68□□□□□ -1.5
LIG3P49916 RNU6-603P-201ENST00000411403 107 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG3P49916 AC079355.1-201ENST00000421770 223 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AL121776.1-201ENST00000429337 372 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG3P49916 AL627308.1-201ENST00000435693 821 ntBASIC5.68□□□□□ -1.5
LIG3P49916 UBE2V1P13-201ENST00000436983 439 ntBASIC5.68□□□□□ -1.5
LIG3P49916 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 AC105402.2-201ENST00000438503 358 ntBASIC5.68□□□□□ -1.5
LIG3P49916 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
LIG3P49916 AC007677.1-201ENST00000445757 515 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.68□□□□□ -1.5
LIG3P49916 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG3P49916 MEMO1P4-201ENST00000453590 386 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG3P49916 AC021382.1-201ENST00000483523 359 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC055855.1-201ENST00000489563 579 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG3P49916 AC093278.1-201ENST00000494700 600 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AL136038.1-201ENST00000497246 351 ntBASIC5.68□□□□□ -1.5
LIG3P49916 RN7SL466P-201ENST00000497546 295 ntBASIC5.68□□□□□ -1.5
LIG3P49916 HMGN1P13-201ENST00000505795 138 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG3P49916 AC011411.1-201ENST00000509592 876 ntBASIC5.68□□□□□ -1.5
LIG3P49916 SNORD60.2-201ENST00000516883 86 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.68□□□□□ -1.5
LIG3P49916 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.68□□□□□ -1.5
LIG3P49916 AC022690.1-201ENST00000526681 550 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG3P49916 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.68□□□□□ -1.5
LIG3P49916 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG3P49916 MIR7853-201ENST00000584820 132 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC110743.1-201ENST00000584870 478 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC098848.2-201ENST00000588023 330 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AL442067.2-201ENST00000614033 363 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AL049767.1-202ENST00000637826 242 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC100810.6-201ENST00000638068 285 ntBASIC5.68□□□□□ -1.5
LIG3P49916 AC011460.1-201ENST00000636268 1834 ntBASIC5.68□□□□□ -1.5
LIG3P49916 MAPK10-349ENST00000641767 3661 ntBASIC5.68□□□□□ -1.5
LIG3P49916 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
LIG3P49916 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 AL122126.1-201ENST00000546905 1318 ntBASIC5.68□□□□□ -1.5
LIG3P49916 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.68□□□□□ -1.5
LIG3P49916 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG3P49916 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
LIG3P49916 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
LIG3P49916 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.67□□□□□ -1.5
LIG3P49916 AL078621.3-201ENST00000623707 2042 ntBASIC5.67□□□□□ -1.5
LIG3P49916 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 AL360270.2-201ENST00000562952 5985 ntBASIC5.67□□□□□ -1.5
LIG3P49916 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG3P49916 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
LIG3P49916 RNU1-130P-201ENST00000363930 160 ntBASIC5.67□□□□□ -1.5
LIG3P49916 UBBP2-201ENST00000376781 231 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms