Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR4524B-201ENST00000581569 115 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 DNAJC19P3-201ENST00000594491 331 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 VN1R78P-201ENST00000597393 564 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.42□□□□□ -1.86
COL5A3P25940 AC008725.1-201ENST00000605123 2263 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL5A3P25940 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL5A3P25940 AC107081.3-201ENST00000612715 2034 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL5A3P25940 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL5A3P25940 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL5A3P25940 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL5A3P25940 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.42□□□□□ -1.86
COL5A3P25940 AC015813.6-201ENST00000624409 5808 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.41□□□□□ -1.86
COL5A3P25940 AC073136.2-201ENST00000417282 849 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 AC245291.1-201ENST00000419501 328 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 YPEL5P1-201ENST00000419731 367 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 AC112220.1-201ENST00000434628 355 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 RPS29P6-201ENST00000438196 145 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 RPL23AP31-201ENST00000456160 467 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.41□□□□□ -1.86
COL5A3P25940 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
COL5A3P25940 AC093663.2-201ENST00000484625 313 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 FAM60DP-201ENST00000524174 632 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.41□□□□□ -1.86
COL5A3P25940 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.41□□□□□ -1.86
COL5A3P25940 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 CTSLP2-204ENST00000629029 392 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
COL5A3P25940 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.41□□□□□ -1.86
COL5A3P25940 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.41□□□□□ -1.86
COL5A3P25940 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
COL5A3P25940 AL138878.1-201ENST00000405131 347 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 RPL7P10-201ENST00000417407 739 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 ZYG11AP1-201ENST00000430329 837 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 PPIAP17-201ENST00000438507 471 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 AC096725.1-201ENST00000514266 313 ntBASIC3.41□□□□□ -1.86
COL5A3P25940 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.41□□□□□ -1.86
COL5A3P25940 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.41□□□□□ -1.86
COL5A3P25940 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.41□□□□□ -1.86
COL5A3P25940 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC3.41□□□□□ -1.86
COL5A3P25940 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL5A3P25940 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL5A3P25940 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
COL5A3P25940 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL5A3P25940 RNA5SP383-201ENST00000362934 120 ntBASIC3.4□□□□□ -1.87
COL5A3P25940 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL5A3P25940 AC019155.1-201ENST00000382242 574 ntBASIC3.4□□□□□ -1.87
COL5A3P25940 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.4□□□□□ -1.87
COL5A3P25940 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.4□□□□□ -1.87
COL5A3P25940 TOMM20P4-201ENST00000427861 435 ntBASIC3.4□□□□□ -1.87
COL5A3P25940 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.4□□□□□ -1.87
COL5A3P25940 MTND6P18-201ENST00000439477 513 ntBASIC3.4□□□□□ -1.87
COL5A3P25940 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.4□□□□□ -1.87
COL5A3P25940 RN7SKP60-201ENST00000516985 239 ntBASIC3.4□□□□□ -1.87
COL5A3P25940 AP000919.1-202ENST00000581139 1264 ntBASIC3.4□□□□□ -1.87
COL5A3P25940 AC009039.2-201ENST00000624524 529 ntBASIC3.4□□□□□ -1.87
COL5A3P25940 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
COL5A3P25940 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL5A3P25940 SNORD62.1-201ENST00000362541 86 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 MIR518C-201ENST00000384822 101 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 AL583834.1-201ENST00000406943 343 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 IPMKP1-201ENST00000425988 855 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.39□□□□□ -1.87
COL5A3P25940 AC105402.2-201ENST00000438503 358 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 AC017007.3-201ENST00000479865 435 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 AC092593.1-201ENST00000515413 1815 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 RN7SKP283-201ENST00000517197 270 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 AP001646.1-201ENST00000527936 915 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 UBTFL10-201ENST00000528532 562 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 AC009163.5-201ENST00000575421 637 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 MIR7843-201ENST00000622274 79 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL5A3P25940 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL5A3P25940 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL5A3P25940 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.39□□□□□ -1.87
COL5A3P25940 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.39□□□□□ -1.87
COL5A3P25940 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.39□□□□□ -1.87
COL5A3P25940 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.39□□□□□ -1.87
COL5A3P25940 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.39□□□□□ -1.87
COL5A3P25940 AC005921.1-201ENST00000510589 286 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.39□□□□□ -1.87
COL5A3P25940 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.39□□□□□ -1.87
COL5A3P25940 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC3.39□□□□□ -1.87
COL5A3P25940 AL589935.2-201ENST00000616471 1231 ntBASIC3.39□□□□□ -1.87
COL5A3P25940 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
COL5A3P25940 MIR423-201ENST00000362201 94 ntBASIC3.38□□□□□ -1.87
COL5A3P25940 ATF1P1-201ENST00000406040 927 ntBASIC3.38□□□□□ -1.87
COL5A3P25940 RPS4XP7-201ENST00000406274 780 ntBASIC3.38□□□□□ -1.87
COL5A3P25940 CBX1P4-201ENST00000439415 457 ntBASIC3.38□□□□□ -1.87
COL5A3P25940 RPL7P20-201ENST00000520308 745 ntBASIC3.38□□□□□ -1.87
COL5A3P25940 IGKV3-31-201ENST00000523109 329 ntBASIC3.38□□□□□ -1.87
COL5A3P25940 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.38□□□□□ -1.87
COL5A3P25940 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
COL5A3P25940 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.38□□□□□ -1.87
COL5A3P25940 AC079228.1-201ENST00000624774 1049 ntBASIC3.38□□□□□ -1.87
COL5A3P25940 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A3P25940 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.38□□□□□ -1.87
COL5A3P25940 MAPK10-373ENST00000641983 6772 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms