Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXC4P09017 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXC4P09017 TMED11P-201ENST00000479478 690 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 RPL21P103-201ENST00000479921 488 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 OR9N1P-202ENST00000494289 481 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXC4P09017 NAMPTP2-201ENST00000505629 1115 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXC4P09017 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC4P09017 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXC4P09017 AC068339.2-201ENST00000534395 618 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXC4P09017 AL389895.1-201ENST00000554127 252 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXC4P09017 AC027449.1-201ENST00000608890 407 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 AL050303.3-201ENST00000613704 284 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HOXC4P09017 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXC4P09017 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HOXC4P09017 Z83843.1-201ENST00000604070 3685 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 AP001486.2-201ENST00000561652 5113 ntBASIC3.38□□□□□ -1.87
HOXC4P09017 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HOXC4P09017 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
HOXC4P09017 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC4P09017 CR381670.1-201ENST00000624291 1693 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXC4P09017 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXC4P09017 Y_RNA.333-201ENST00000365274 102 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 RNA5SP235-201ENST00000365411 114 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC4P09017 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC4P09017 U3.19-201ENST00000390893 196 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 HMGB1P13-201ENST00000406019 642 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 SNORA11.1-201ENST00000408133 129 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 MTCO3P4-201ENST00000419236 787 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC4P09017 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC4P09017 AC008065.1-201ENST00000428525 348 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC4P09017 RPL7P29-201ENST00000437151 728 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC4P09017 MTND2P6-201ENST00000455337 1030 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AC096992.1-201ENST00000459808 709 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC4P09017 RPS3AP50-201ENST00000487064 803 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.37□□□□□ -1.87
HOXC4P09017 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC4P09017 SNORA70.19-201ENST00000516717 90 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 SCARNA1-201ENST00000517138 166 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC4P09017 AP001372.4-201ENST00000524889 472 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 OR4R3P-201ENST00000525084 838 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 NOP56P3-201ENST00000549457 385 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC4P09017 MIR5195-201ENST00000583555 115 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.37□□□□□ -1.87
HOXC4P09017 BNIP3P38-201ENST00000601117 544 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 LLPHP1-201ENST00000603571 367 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AL158050.2-201ENST00000605336 568 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC4P09017 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AC022149.2-201ENST00000621061 203 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AL138955.1-201ENST00000622881 1040 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AC090772.4-201ENST00000623599 362 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 AP003485.1-201ENST00000625093 753 ntBASIC3.37□□□□□ -1.87
HOXC4P09017 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC4P09017 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC4P09017 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXC4P09017 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC4P09017 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
HOXC4P09017 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC4P09017 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC4P09017 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC4P09017 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC4P09017 RNU6-792P-201ENST00000363490 107 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 SNORD115-48-201ENST00000364764 76 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC4P09017 RNU6-98P-201ENST00000384173 107 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 SNORA9-201ENST00000384215 133 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 EI24P2-201ENST00000397776 1076 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXC4P09017 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC4P09017 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXC4P09017 MTCO3P16-201ENST00000454456 754 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC4P09017 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC4P09017 CABYRP1-201ENST00000465493 1045 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXC4P09017 MTCO2P9-201ENST00000503214 694 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 AC112198.1-201ENST00000505369 1220 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 SNORA31.13-201ENST00000516624 135 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC4P09017 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC4P09017 COX6B1P6-201ENST00000522347 255 ntBASIC3.36□□□□□ -1.87
HOXC4P09017 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXC4P09017 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXC4P09017 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms