Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 RNA5SP509-201ENST00000364577 119 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 BTBD10P2-201ENST00000404779 676 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 RNU2-28P-201ENST00000410457 189 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 RN7SKP235-201ENST00000410662 305 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC069218.2-201ENST00000411665 344 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 RAP1BP1-201ENST00000412709 553 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC011933.1-201ENST00000413334 321 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 RPS3AP9-201ENST00000417027 792 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC092647.1-201ENST00000420654 287 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL356387.2-201ENST00000422272 243 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 SDCBPP2-201ENST00000424643 885 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL157831.1-201ENST00000426134 473 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 NPM1P34-201ENST00000428821 893 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 KCTD10P1-201ENST00000434203 625 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 RPS3AP54-201ENST00000435535 734 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC104978.1-201ENST00000449387 391 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 ANKRD26P4-201ENST00000455755 950 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC116533.1-201ENST00000459748 321 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 GAPDHP36-201ENST00000480688 918 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC068587.1-201ENST00000483613 781 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AP000563.1-201ENST00000490865 758 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC093824.1-201ENST00000508796 343 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC119751.5-201ENST00000514077 770 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 MTCO1P30-201ENST00000515244 580 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 ARL2BPP5-201ENST00000523141 481 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AP003461.1-201ENST00000528866 78 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC063950.1-201ENST00000552036 308 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL161713.1-201ENST00000555538 145 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 RPL23AP87-202ENST00000573039 466 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 LARP7P2-201ENST00000575306 125 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC021171.1-201ENST00000603137 706 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC083809.1-201ENST00000615051 472 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 Z99129.2-201ENST00000619967 314 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC103858.2-201ENST00000621471 543 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC011944.2-201ENST00000624440 683 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AC092184.1-201ENST00000625042 715 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL773545.4-201ENST00000637262 310 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL513478.4-201ENST00000641636 310 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.59□□□□□ -1.83
NKX3-1Q99801 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
NKX3-1Q99801 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
NKX3-1Q99801 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
NKX3-1Q99801 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.59□□□□□ -1.84
NKX3-1Q99801 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
NKX3-1Q99801 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
NKX3-1Q99801 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
NKX3-1Q99801 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC008725.1-201ENST00000605123 2263 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-1Q99801 RNU6-216P-201ENST00000363282 104 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 RN7SKP44-201ENST00000363602 316 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 RNU6-621P-201ENST00000364752 109 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 ENSAP1-201ENST00000392855 326 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 SNORA3C-201ENST00000408792 125 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 ELOCP19-201ENST00000411919 318 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 JKAMPP1-201ENST00000413804 919 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC107081.1-201ENST00000414975 361 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AL592293.2-201ENST00000422292 996 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 CHIAP3-201ENST00000423668 1133 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 RPS25P9-201ENST00000435591 252 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 RPS26P56-201ENST00000444468 240 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-1Q99801 RPS26P15-201ENST00000488067 348 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms