Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MIR93-201ENST00000385024 80 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 SSXP10-201ENST00000402595 565 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 BTBD10P2-201ENST00000404779 676 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RPL21P65-201ENST00000406094 466 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AL450338.1-201ENST00000407987 512 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RNU2-28P-201ENST00000410457 189 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC069218.2-201ENST00000411665 344 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC073136.2-201ENST00000417282 849 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 TIMM9P2-201ENST00000419324 266 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC092647.1-201ENST00000420654 287 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 MTND5P25-201ENST00000430499 799 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AL500522.2-201ENST00000448562 343 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RSL24D1P3-201ENST00000449255 495 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC104978.1-201ENST00000449387 391 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RPL5P32-201ENST00000454085 879 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 TRBV26-201ENST00000456572 344 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC010301.1-201ENST00000473936 355 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC087385.1-201ENST00000475062 312 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC021146.8-201ENST00000507455 733 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 HMGB1P28-201ENST00000507778 552 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 VWA8P1-201ENST00000510889 176 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AP000926.4-201ENST00000527351 454 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 TRAV8-5-201ENST00000537369 341 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC090502.2-201ENST00000549267 280 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC107016.1-201ENST00000550463 337 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 LSM6P2-201ENST00000552208 177 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 TVP23BP1-201ENST00000557500 617 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AGGF1P8-201ENST00000562979 1000 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RN7SL600P-201ENST00000581811 299 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AL159169.3-201ENST00000608871 561 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC019176.2-201ENST00000611579 315 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC091304.6-201ENST00000619761 202 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RMST_9.1-201ENST00000619945 193 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC018529.3-201ENST00000624212 2254 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 ZNF33CP-201ENST00000432492 2030 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 AC012020.1-201ENST00000624541 1728 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 OR56B2P-201ENST00000317102 954 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 RNA5SP52-201ENST00000362448 134 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 RNU6-984P-201ENST00000363236 109 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 RNU1-130P-201ENST00000363930 160 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 ENSAP1-201ENST00000392855 326 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AL590704.1-201ENST00000402856 794 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AL023807.1-201ENST00000407932 359 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 Z92545.1-201ENST00000411782 234 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 PPIAP15-201ENST00000479662 484 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 SETP14-201ENST00000497538 873 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC119751.5-201ENST00000514077 770 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 CCNG2P1-201ENST00000549521 1000 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms