Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
RNF4P78317 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
RNF4P78317 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
RNF4P78317 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.26□□□□□ -1.57
RNF4P78317 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.26□□□□□ -1.57
RNF4P78317 Y_RNA.474-201ENST00000384341 102 ntBASIC5.26□□□□□ -1.57
RNF4P78317 RNU6-606P-201ENST00000384721 111 ntBASIC5.26□□□□□ -1.57
RNF4P78317 RN7SKP140-201ENST00000411196 284 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC5.26□□□□□ -1.57
RNF4P78317 AL354868.1-201ENST00000417077 482 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC127526.1-201ENST00000417526 366 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC092651.1-201ENST00000426110 312 ntBASIC5.26□□□□□ -1.57
RNF4P78317 OR4F13P-201ENST00000428478 931 ntBASIC5.26□□□□□ -1.57
RNF4P78317 RPS20P5-201ENST00000434808 360 ntBASIC5.26□□□□□ -1.57
RNF4P78317 HMGB1P18-201ENST00000438801 619 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AL391987.1-201ENST00000441025 200 ntBASIC5.26□□□□□ -1.57
RNF4P78317 DDX3P2-201ENST00000446138 111 ntBASIC5.26□□□□□ -1.57
RNF4P78317 RPL12P39-201ENST00000455456 496 ntBASIC5.26□□□□□ -1.57
RNF4P78317 MTND4P17-201ENST00000470444 350 ntBASIC5.26□□□□□ -1.57
RNF4P78317 RN7SL717P-201ENST00000478343 297 ntBASIC5.26□□□□□ -1.57
RNF4P78317 IGBP1P4-201ENST00000503202 879 ntBASIC5.26□□□□□ -1.57
RNF4P78317 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.26□□□□□ -1.57
RNF4P78317 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.26□□□□□ -1.57
RNF4P78317 AC114797.1-201ENST00000514003 728 ntBASIC5.26□□□□□ -1.57
RNF4P78317 RNU6-327P-201ENST00000516270 127 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC5.26□□□□□ -1.57
RNF4P78317 AC027544.3-201ENST00000535082 757 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC068993.1-201ENST00000546724 589 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC022404.1-201ENST00000555320 273 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AL049872.1-201ENST00000556323 322 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.26□□□□□ -1.57
RNF4P78317 BNIP3P22-201ENST00000593399 556 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.26□□□□□ -1.57
RNF4P78317 KC877982.1-201ENST00000602313 470 ntBASIC5.26□□□□□ -1.57
RNF4P78317 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.26□□□□□ -1.57
RNF4P78317 AC123786.2-201ENST00000603459 275 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC010591.1-201ENST00000603941 649 ntBASIC5.26□□□□□ -1.57
RNF4P78317 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.26□□□□□ -1.57
RNF4P78317 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC5.26□□□□□ -1.57
RNF4P78317 AC104237.2-201ENST00000612456 443 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC015871.5-202ENST00000623252 701 ntBASIC5.26□□□□□ -1.57
RNF4P78317 AC015908.5-201ENST00000623289 343 ntBASIC5.26□□□□□ -1.57
RNF4P78317 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.26□□□□□ -1.57
RNF4P78317 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
RNF4P78317 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.26□□□□□ -1.57
RNF4P78317 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
RNF4P78317 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
RNF4P78317 ELL2P4-201ENST00000446870 1376 ntBASIC5.26□□□□□ -1.57
RNF4P78317 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF4P78317 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
RNF4P78317 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.25□□□□□ -1.57
RNF4P78317 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.25□□□□□ -1.57
RNF4P78317 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 AL592148.3-201ENST00000608771 2646 ntBASIC5.25□□□□□ -1.57
RNF4P78317 AC006210.2-201ENST00000367074 1545 ntBASIC5.25□□□□□ -1.57
RNF4P78317 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 MIR323A-201ENST00000362199 86 ntBASIC5.25□□□□□ -1.57
RNF4P78317 RN7SKP269-201ENST00000365545 319 ntBASIC5.25□□□□□ -1.57
RNF4P78317 RNU4-48P-201ENST00000365559 182 ntBASIC5.25□□□□□ -1.57
RNF4P78317 RNU4-20P-201ENST00000365601 151 ntBASIC5.25□□□□□ -1.57
RNF4P78317 Y_RNA.384-201ENST00000383909 102 ntBASIC5.25□□□□□ -1.57
RNF4P78317 RN7SKP293-201ENST00000411389 296 ntBASIC5.25□□□□□ -1.57
RNF4P78317 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.25□□□□□ -1.57
RNF4P78317 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.25□□□□□ -1.57
RNF4P78317 AL645937.1-202ENST00000421799 937 ntBASIC5.25□□□□□ -1.57
RNF4P78317 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.25□□□□□ -1.57
RNF4P78317 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC5.25□□□□□ -1.57
RNF4P78317 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.25□□□□□ -1.57
RNF4P78317 EEF1A1P1-201ENST00000447052 739 ntBASIC5.25□□□□□ -1.57
RNF4P78317 MTND3P16-201ENST00000452205 344 ntBASIC5.25□□□□□ -1.57
RNF4P78317 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.25□□□□□ -1.57
RNF4P78317 AC023141.9-201ENST00000458734 412 ntBASIC5.25□□□□□ -1.57
RNF4P78317 RN7SL174P-201ENST00000475578 289 ntBASIC5.25□□□□□ -1.57
RNF4P78317 AC096576.1-201ENST00000489014 359 ntBASIC5.25□□□□□ -1.57
RNF4P78317 RN7SL101P-201ENST00000496350 279 ntBASIC5.25□□□□□ -1.57
RNF4P78317 RNU4-29P-201ENST00000515943 174 ntBASIC5.25□□□□□ -1.57
RNF4P78317 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.25□□□□□ -1.57
RNF4P78317 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.25□□□□□ -1.57
RNF4P78317 AC103843.2-201ENST00000530523 682 ntBASIC5.25□□□□□ -1.57
RNF4P78317 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.25□□□□□ -1.57
RNF4P78317 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.25□□□□□ -1.57
RNF4P78317 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.25□□□□□ -1.57
RNF4P78317 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.25□□□□□ -1.57
RNF4P78317 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.25□□□□□ -1.57
RNF4P78317 AC063949.1-201ENST00000552900 865 ntBASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 162.4 ms