Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.41□□□□□ -1.7
HDAC4P56524 AL161729.3-201ENST00000603533 673 ntBASIC4.41□□□□□ -1.7
HDAC4P56524 AL031666.3-201ENST00000609320 1006 ntBASIC4.41□□□□□ -1.7
HDAC4P56524 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HDAC4P56524 AC114781.5-201ENST00000615297 108 ntBASIC4.41□□□□□ -1.7
HDAC4P56524 AL359715.5-201ENST00000623431 443 ntBASIC4.41□□□□□ -1.7
HDAC4P56524 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.41□□□□□ -1.7
HDAC4P56524 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HDAC4P56524 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HDAC4P56524 AC027287.1-201ENST00000553115 1453 ntBASIC4.41□□□□□ -1.7
HDAC4P56524 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.41□□□□□ -1.7
HDAC4P56524 AP000776.1-201ENST00000530032 1663 ntBASIC4.41□□□□□ -1.7
HDAC4P56524 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HDAC4P56524 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HDAC4P56524 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HDAC4P56524 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.4□□□□□ -1.7
HDAC4P56524 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.4□□□□□ -1.7
HDAC4P56524 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.7
HDAC4P56524 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HDAC4P56524 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HDAC4P56524 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
HDAC4P56524 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 FAM3C2-201ENST00000312214 681 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HDAC4P56524 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.4□□□□□ -1.71
HDAC4P56524 RNA5SP366-201ENST00000365454 123 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.4□□□□□ -1.71
HDAC4P56524 SNORD116-8-201ENST00000384365 95 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 CASP3-203ENST00000393588 677 ntTSL 4 BASIC4.4□□□□□ -1.71
HDAC4P56524 AL121978.1-201ENST00000402778 359 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 MTCO3P31-201ENST00000405526 789 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 MIR1179-201ENST00000408703 91 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 RNU2-21P-201ENST00000410368 188 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 RAP1BP1-201ENST00000412709 553 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.4□□□□□ -1.71
HDAC4P56524 RPL7P53-201ENST00000421245 739 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 HLA-N-201ENST00000437516 135 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.4□□□□□ -1.71
HDAC4P56524 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.4□□□□□ -1.71
HDAC4P56524 MTND2P22-201ENST00000444325 1033 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 NUTF2P7-201ENST00000453086 375 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 RPL21P134-201ENST00000453468 483 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 RPL5P32-201ENST00000454085 879 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 AC068305.1-201ENST00000497406 726 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.4□□□□□ -1.71
HDAC4P56524 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.4□□□□□ -1.71
HDAC4P56524 AC093840.1-201ENST00000511599 336 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.4□□□□□ -1.71
HDAC4P56524 RNU6-1225P-201ENST00000516336 65 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.4□□□□□ -1.71
HDAC4P56524 AP000619.3-201ENST00000535634 1127 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.4□□□□□ -1.71
HDAC4P56524 MTCYBP27-201ENST00000555160 670 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 AC087465.1-201ENST00000560574 245 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.4□□□□□ -1.71
HDAC4P56524 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC4.4□□□□□ -1.71
HDAC4P56524 MIR3160-1-201ENST00000577972 85 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.4□□□□□ -1.71
HDAC4P56524 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HDAC4P56524 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.4□□□□□ -1.71
HDAC4P56524 AC110741.2-201ENST00000605278 268 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 AL109618.2-201ENST00000605527 211 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 MIR432-201ENST00000606207 94 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.4□□□□□ -1.71
HDAC4P56524 AC105429.2-201ENST00000610567 517 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 AC064801.1-201ENST00000612025 407 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 AL139418.1-201ENST00000613613 177 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 AC131159.1-201ENST00000621854 213 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.4□□□□□ -1.71
HDAC4P56524 MIR4278-201ENST00000636094 69 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 AL136964.1-201ENST00000622038 2990 ntBASIC4.4□□□□□ -1.71
HDAC4P56524 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.4□□□□□ -1.71
HDAC4P56524 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HDAC4P56524 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HDAC4P56524 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
HDAC4P56524 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HDAC4P56524 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HDAC4P56524 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
HDAC4P56524 Y_RNA.169-201ENST00000363745 96 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 SUGT1P1-201ENST00000379514 476 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HDAC4P56524 TAF9BP1-201ENST00000396646 746 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 RN7SKP263-201ENST00000411194 309 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.39□□□□□ -1.71
HDAC4P56524 LUZP4P1-201ENST00000415420 344 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 RPL31P45-201ENST00000419532 356 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 PTP4A1P5-201ENST00000420305 455 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 CHIAP3-201ENST00000423668 1133 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 USP9YP11-201ENST00000427537 717 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 IFNNP1-201ENST00000429219 553 ntBASIC4.39□□□□□ -1.71
HDAC4P56524 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms