Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC234779.1-201ENST00000425910 285 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 VDAC1P6-201ENST00000430062 855 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN9P43378 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN9P43378 AC105402.2-201ENST00000438503 358 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AL445567.1-201ENST00000439121 144 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 MTCO1P48-201ENST00000448024 1096 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.37□□□□□ -1.71
PTPN9P43378 HMGB3P21-201ENST00000452483 547 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 RN7SL585P-201ENST00000470538 280 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AC006517.1-201ENST00000480485 328 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AC013828.1-201ENST00000481845 158 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 HMGB1P28-201ENST00000507778 552 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AC108475.1-201ENST00000507880 950 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC4.37□□□□□ -1.71
PTPN9P43378 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 OR5BM1P-201ENST00000512021 366 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 RNU6-232P-201ENST00000517144 64 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN9P43378 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN9P43378 AL356057.1-201ENST00000533798 831 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN9P43378 AC069240.1-201ENST00000548774 375 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.37□□□□□ -1.71
PTPN9P43378 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 AL389895.1-201ENST00000554127 252 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 TVP23BP1-201ENST00000557500 617 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN9P43378 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 Z94722.1-201ENST00000604328 474 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN9P43378 AC078899.5-201ENST00000612475 178 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 AC004943.3-201ENST00000624116 600 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 AC117529.2-201ENST00000512159 2068 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.37□□□□□ -1.71
PTPN9P43378 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN9P43378 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
PTPN9P43378 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
PTPN9P43378 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 MIR448-201ENST00000362131 111 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 MIR383-201ENST00000362257 73 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 RNU6-1200P-201ENST00000384162 107 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 RNU6-441P-201ENST00000384545 106 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 MIR649-201ENST00000384843 97 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 AL450338.1-201ENST00000407987 512 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 MIR1284-201ENST00000408337 120 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN9P43378 AL133384.1-201ENST00000412744 351 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN9P43378 COX6B1P7-201ENST00000430845 235 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC4.36□□□□□ -1.71
PTPN9P43378 RPS25P9-201ENST00000435591 252 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN9P43378 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN9P43378 RPL18AP17-201ENST00000455326 198 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 MTCO3P2-201ENST00000457365 171 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC109327.1-201ENST00000471666 403 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 UQCRHP4-201ENST00000471686 272 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 BZW1P2-201ENST00000473537 826 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 RPL30P6-201ENST00000475925 342 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC111000.2-201ENST00000507775 550 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC017037.1-201ENST00000508460 471 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC117522.2-201ENST00000510049 657 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 RN7SKP82-201ENST00000516786 223 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.36□□□□□ -1.71
PTPN9P43378 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN9P43378 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN9P43378 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN9P43378 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN9P43378 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN9P43378 AC068446.3-201ENST00000555285 382 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN9P43378 MTCYBP28-201ENST00000566728 1132 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 PIGPP4-201ENST00000584447 307 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC107982.3-201ENST00000584957 985 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 VN1R90P-201ENST00000595717 726 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC006270.3-201ENST00000605967 1036 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC072039.2-201ENST00000608883 439 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC004223.4-201ENST00000612426 332 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AL354976.1-201ENST00000613843 387 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AC092650.2-201ENST00000619984 902 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN9P43378 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.36□□□□□ -1.71
PTPN9P43378 AP005264.7-201ENST00000625003 745 ntBASIC4.36□□□□□ -1.71
PTPN9P43378 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.36□□□□□ -1.71
PTPN9P43378 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN9P43378 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms