Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
LIG1P18858 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
LIG1P18858 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC6.05□□□□□ -1.44
LIG1P18858 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC6.05□□□□□ -1.44
LIG1P18858 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
LIG1P18858 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
LIG1P18858 AL645937.1-201ENST00000641739 1652 ntBASIC6.04□□□□□ -1.44
LIG1P18858 OR11H5P-202ENST00000641612 1325 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AL731532.2-201ENST00000623542 1953 ntBASIC6.04□□□□□ -1.44
LIG1P18858 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 AC024560.2-201ENST00000507981 1497 ntBASIC6.04□□□□□ -1.44
LIG1P18858 ANAPC1P1-201ENST00000426186 2145 ntBASIC6.04□□□□□ -1.44
LIG1P18858 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 RNU6-777P-201ENST00000364265 104 ntBASIC6.04□□□□□ -1.44
LIG1P18858 SNORD81.2-201ENST00000365153 76 ntBASIC6.04□□□□□ -1.44
LIG1P18858 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
LIG1P18858 RNU6-317P-201ENST00000384031 107 ntBASIC6.04□□□□□ -1.44
LIG1P18858 MIR589-201ENST00000385238 99 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AC009804.1-201ENST00000400949 179 ntBASIC6.04□□□□□ -1.44
LIG1P18858 RPA3-203ENST00000401447 414 ntTSL 3 BASIC6.04□□□□□ -1.44
LIG1P18858 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.04□□□□□ -1.44
LIG1P18858 AL353193.1-201ENST00000421444 268 ntBASIC6.04□□□□□ -1.44
LIG1P18858 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC6.04□□□□□ -1.44
LIG1P18858 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC6.04□□□□□ -1.44
LIG1P18858 TAAR7P-201ENST00000436141 242 ntBASIC6.04□□□□□ -1.44
LIG1P18858 CYCSP12-201ENST00000437729 300 ntBASIC6.04□□□□□ -1.44
LIG1P18858 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.04□□□□□ -1.44
LIG1P18858 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC6.04□□□□□ -1.44
LIG1P18858 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC6.04□□□□□ -1.44
LIG1P18858 NIPA2P5-201ENST00000452282 464 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.04□□□□□ -1.44
LIG1P18858 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC6.04□□□□□ -1.44
LIG1P18858 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.04□□□□□ -1.44
LIG1P18858 RPL7P6-201ENST00000480903 738 ntBASIC6.04□□□□□ -1.44
LIG1P18858 FAM172BP-201ENST00000487497 1089 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AC023194.1-201ENST00000493084 308 ntBASIC6.04□□□□□ -1.44
LIG1P18858 RPS24P16-201ENST00000497294 392 ntBASIC6.04□□□□□ -1.44
LIG1P18858 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.04□□□□□ -1.44
LIG1P18858 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.04□□□□□ -1.44
LIG1P18858 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC6.04□□□□□ -1.44
LIG1P18858 Y_RNA.672-201ENST00000516289 104 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC6.04□□□□□ -1.44
LIG1P18858 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC6.04□□□□□ -1.44
LIG1P18858 BRD9P1-201ENST00000529855 560 ntBASIC6.04□□□□□ -1.44
LIG1P18858 OR4A12P-201ENST00000530847 918 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.04□□□□□ -1.44
LIG1P18858 AC034268.2-201ENST00000571784 482 ntBASIC6.04□□□□□ -1.44
LIG1P18858 FKBP1AP1-201ENST00000594588 318 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC6.04□□□□□ -1.44
LIG1P18858 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC6.04□□□□□ -1.44
LIG1P18858 RMST_3.1-201ENST00000611651 109 ntBASIC6.04□□□□□ -1.44
LIG1P18858 AC073869.10-201ENST00000642016 354 ntBASIC6.04□□□□□ -1.44
LIG1P18858 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.04□□□□□ -1.44
LIG1P18858 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC6.04□□□□□ -1.44
LIG1P18858 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 PHKBP1-201ENST00000450951 1951 ntBASIC6.04□□□□□ -1.44
LIG1P18858 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIG1P18858 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
LIG1P18858 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
LIG1P18858 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 AC100778.3-201ENST00000580060 1750 ntBASIC6.03□□□□□ -1.44
LIG1P18858 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.03□□□□□ -1.44
LIG1P18858 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 OR52B1P-201ENST00000316506 909 ntBASIC6.03□□□□□ -1.44
LIG1P18858 RNU6-451P-201ENST00000362921 107 ntBASIC6.03□□□□□ -1.44
LIG1P18858 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
LIG1P18858 AL133388.1-201ENST00000404509 287 ntBASIC6.03□□□□□ -1.44
LIG1P18858 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 PDCL2P1-201ENST00000419302 352 ntBASIC6.03□□□□□ -1.44
LIG1P18858 AC233981.1-201ENST00000423224 461 ntBASIC6.03□□□□□ -1.44
LIG1P18858 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 SAR1AP4-201ENST00000429225 591 ntBASIC6.03□□□□□ -1.44
LIG1P18858 RPL7L1P9-201ENST00000431298 745 ntBASIC6.03□□□□□ -1.44
LIG1P18858 GTF2IP20-201ENST00000431663 360 ntBASIC6.03□□□□□ -1.44
LIG1P18858 RPL12P17-201ENST00000432393 498 ntBASIC6.03□□□□□ -1.44
LIG1P18858 GSTM5P1-201ENST00000434751 660 ntBASIC6.03□□□□□ -1.44
LIG1P18858 RPL7P54-201ENST00000438336 674 ntBASIC6.03□□□□□ -1.44
LIG1P18858 SPRYD7P1-201ENST00000443861 570 ntBASIC6.03□□□□□ -1.44
LIG1P18858 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms