Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 AC127526.1-201ENST00000417526 366 ntBASIC3.44□□□□□ -1.86
SDC1P18827 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC1P18827 RPS6P14-201ENST00000425165 719 ntBASIC3.44□□□□□ -1.86
SDC1P18827 OSTCP5-201ENST00000425293 453 ntBASIC3.44□□□□□ -1.86
SDC1P18827 MTCYBP32-201ENST00000427945 1084 ntBASIC3.44□□□□□ -1.86
SDC1P18827 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC1P18827 RPS29P7-201ENST00000439662 171 ntBASIC3.44□□□□□ -1.86
SDC1P18827 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC1P18827 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 ACTG1P13-201ENST00000486987 1043 ntBASIC3.44□□□□□ -1.86
SDC1P18827 CEACAMP10-202ENST00000495431 496 ntBASIC3.44□□□□□ -1.86
SDC1P18827 FCF1P3-201ENST00000496394 590 ntBASIC3.44□□□□□ -1.86
SDC1P18827 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC1P18827 PCBP2P3-201ENST00000509726 843 ntBASIC3.44□□□□□ -1.86
SDC1P18827 FTH1P9-201ENST00000513251 355 ntBASIC3.44□□□□□ -1.86
SDC1P18827 SNORA19.3-201ENST00000516165 130 ntBASIC3.44□□□□□ -1.86
SDC1P18827 RNU6-579P-201ENST00000516879 102 ntBASIC3.44□□□□□ -1.86
SDC1P18827 RNU6-1028P-201ENST00000517164 93 ntBASIC3.44□□□□□ -1.86
SDC1P18827 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC1P18827 NDUFS5P6-201ENST00000529136 295 ntBASIC3.44□□□□□ -1.86
SDC1P18827 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC1P18827 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 YWHAZP1-201ENST00000556286 722 ntBASIC3.44□□□□□ -1.86
SDC1P18827 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.44□□□□□ -1.86
SDC1P18827 AC122134.1-202ENST00000569111 1201 ntBASIC3.44□□□□□ -1.86
SDC1P18827 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC1P18827 AC006077.1-201ENST00000604746 343 ntBASIC3.44□□□□□ -1.86
SDC1P18827 AC097504.2-201ENST00000608088 454 ntBASIC3.44□□□□□ -1.86
SDC1P18827 AL391834.2-201ENST00000609982 546 ntBASIC3.44□□□□□ -1.86
SDC1P18827 AC105429.2-201ENST00000610567 517 ntBASIC3.44□□□□□ -1.86
SDC1P18827 RNVU1-4-201ENST00000612985 164 ntBASIC3.44□□□□□ -1.86
SDC1P18827 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC1P18827 AC013437.2-201ENST00000639587 677 ntBASIC3.44□□□□□ -1.86
SDC1P18827 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SDC1P18827 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SDC1P18827 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SDC1P18827 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SDC1P18827 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SDC1P18827 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC1P18827 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 MTND5P28-201ENST00000438005 1594 ntBASIC3.43□□□□□ -1.86
SDC1P18827 ZNF33CP-201ENST00000432492 2030 ntBASIC3.43□□□□□ -1.86
SDC1P18827 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC1P18827 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.43□□□□□ -1.86
SDC1P18827 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 RNU6-1243P-201ENST00000364028 107 ntBASIC3.43□□□□□ -1.86
SDC1P18827 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.43□□□□□ -1.86
SDC1P18827 MIR153-1-201ENST00000384914 90 ntBASIC3.43□□□□□ -1.86
SDC1P18827 MIR122-201ENST00000385044 85 ntBASIC3.43□□□□□ -1.86
SDC1P18827 RPL32P23-201ENST00000397237 405 ntBASIC3.43□□□□□ -1.86
SDC1P18827 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.43□□□□□ -1.86
SDC1P18827 RN7SKP156-201ENST00000410308 342 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC245054.1-201ENST00000420944 258 ntBASIC3.43□□□□□ -1.86
SDC1P18827 ELOCP6-201ENST00000429066 328 ntBASIC3.43□□□□□ -1.86
SDC1P18827 MRPS18BP2-201ENST00000434310 759 ntBASIC3.43□□□□□ -1.86
SDC1P18827 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC1P18827 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
SDC1P18827 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC1P18827 Z77249.1-201ENST00000444622 1175 ntBASIC3.43□□□□□ -1.86
SDC1P18827 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 Z99714.1-201ENST00000450463 807 ntBASIC3.43□□□□□ -1.86
SDC1P18827 ELOCP12-201ENST00000458706 328 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC087879.1-201ENST00000474343 374 ntBASIC3.43□□□□□ -1.86
SDC1P18827 GAPDHP36-201ENST00000480688 918 ntBASIC3.43□□□□□ -1.86
SDC1P18827 GAPDHP39-201ENST00000481866 979 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC093267.1-201ENST00000489176 961 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC1P18827 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC1P18827 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.43□□□□□ -1.86
SDC1P18827 AC093752.1-206ENST00000511823 336 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 AC026402.1-201ENST00000513642 170 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC023632.1-201ENST00000518463 375 ntBASIC3.43□□□□□ -1.86
SDC1P18827 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
SDC1P18827 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.43□□□□□ -1.86
SDC1P18827 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 PARP1P2-201ENST00000556806 195 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC044913.1-201ENST00000557200 430 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC007224.1-201ENST00000564410 144 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC136624.4-201ENST00000573044 370 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC1P18827 AC022069.1-201ENST00000582910 658 ntBASIC3.43□□□□□ -1.86
SDC1P18827 BNIP3P39-201ENST00000601077 554 ntBASIC3.43□□□□□ -1.86
SDC1P18827 Z82195.1-201ENST00000604558 398 ntBASIC3.43□□□□□ -1.86
SDC1P18827 HSPE1P14-201ENST00000605812 302 ntBASIC3.43□□□□□ -1.86
SDC1P18827 AL136295.6-201ENST00000610486 658 ntBASIC3.43□□□□□ -1.86
SDC1P18827 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms