Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL133457.1-201ENST00000564251 987 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC022968.1-201ENST00000567372 442 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC124283.4-201ENST00000581815 456 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AL445363.3-201ENST00000623080 671 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC124312.6-202ENST00000623624 418 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 RPS4XP5-202ENST00000449995 1334 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC110774.1-201ENST00000623567 2018 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 TNPO1P3-201ENST00000436471 2662 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AL121657.1-201ENST00000327215 531 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 RNU1-132P-201ENST00000364300 164 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AL161909.1-201ENST00000397390 712 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 RPS3AP26-201ENST00000398259 784 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AL133384.1-201ENST00000412744 351 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 NAP1L1P3-201ENST00000462291 880 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 RPS23P3-201ENST00000470993 430 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 RPL29P14-201ENST00000495837 428 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 MTND1P6-201ENST00000523621 946 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 OR8G5-201ENST00000524943 1041 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 ZNF705CP-201ENST00000530515 889 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 CYCSP29-201ENST00000533731 318 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC025884.1-201ENST00000556034 378 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AL354760.1-201ENST00000608357 643 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC112484.5-201ENST00000624189 228 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC034229.5-201ENST00000624258 185 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 HPVC1-201ENST00000629899 1198 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 ZNF663P-202ENST00000641770 1131 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AC130650.2-201ENST00000618736 2403 ntBASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.67□□□□□ -1.82
ZNF540Q8NDQ6 AL158163.1-201ENST00000603915 1649 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 RNA5SP479-201ENST00000364858 117 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 RNU6-730P-201ENST00000383954 104 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 SNORD65C-201ENST00000390962 71 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 MTCO2P31-201ENST00000402702 684 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 RN7SKP235-201ENST00000410662 305 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 RPL21P32-201ENST00000419877 477 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 FNDC3CP-201ENST00000420795 1155 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC009237.2-201ENST00000421358 284 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 SNRPEP4-201ENST00000435815 279 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 RPL23AP16-201ENST00000441715 421 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL096803.2-201ENST00000450032 677 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 CDC42P1-201ENST00000456658 548 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 ARPC3P2-201ENST00000457786 533 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 VPS26AP1-201ENST00000483197 979 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 TPT1P3-201ENST00000492841 512 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC021146.1-201ENST00000511202 716 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AP002906.1-201ENST00000603405 233 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL390816.3-201ENST00000604527 1066 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 FAM27D1-201ENST00000612308 341 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL354696.1-201ENST00000614652 497 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL445493.3-201ENST00000619568 477 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AL360181.4-201ENST00000621752 134 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms