Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC243829.7-201ENST00000633081 225 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 AL672167.1-206ENST00000356293 943 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 AC005189.1-201ENST00000431286 310 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 MTND6P18-201ENST00000439477 513 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 PRELID3BP7-201ENST00000503606 469 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 PDCL2P2-201ENST00000533651 189 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 MIR4435-1-201ENST00000582552 80 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 AC021755.1-201ENST00000559747 1447 ntBASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 U3.42-201ENST00000408746 214 ntBASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 RPL21P40-201ENST00000428586 483 ntBASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 PRDX3P4-201ENST00000470828 747 ntBASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 AL096803.3-201ENST00000609032 532 ntBASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC88AQ3V6T2 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 RPL7P26-201ENST00000333817 754 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 RN7SKP285-201ENST00000410137 318 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AC026790.2-201ENST00000606282 430 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AC245100.2-201ENST00000454544 1679 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 SNORA67.4-201ENST00000384688 142 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AC114967.1-201ENST00000504890 259 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AC027176.1-201ENST00000560204 514 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AC009101.1-201ENST00000568135 242 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 AC090312.2-201ENST00000582687 378 ntBASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC88AQ3V6T2 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 SNORA9.2-201ENST00000365361 133 ntBASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 MIR137-201ENST00000385223 102 ntBASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 AC064859.1-201ENST00000624741 174 ntBASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC88AQ3V6T2 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 U3.11-201ENST00000364476 212 ntBASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 MIR34A-201ENST00000385130 110 ntBASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 CYCSP20-201ENST00000473154 315 ntBASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 AC108078.3-201ENST00000502633 489 ntBASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 ANXA2P1-201ENST00000505539 926 ntBASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 RNU6-237P-201ENST00000515985 71 ntBASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 AC112503.1-201ENST00000608436 391 ntBASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 MIR7843-201ENST00000622274 79 ntBASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.65□□□□□ -1.82
CCDC88AQ3V6T2 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC88AQ3V6T2 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC88AQ3V6T2 AP003122.5-201ENST00000527668 3766 ntBASIC3.65□□□□□ -1.83
CCDC88AQ3V6T2 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC88AQ3V6T2 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AL138787.1-202ENST00000437804 898 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC245517.2-201ENST00000442890 346 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC112653.1-201ENST00000443851 386 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms