Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 AC119744.1-201ENST00000454746 1715 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
COL6A1P12109 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC5.42□□□□□ -1.54
COL6A1P12109 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 Y_RNA.9-201ENST00000362354 101 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 RNA5SP28-201ENST00000363841 119 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 Y_RNA.256-201ENST00000364594 104 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 OR1L6-202ENST00000373684 1044 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 SNORA70.10-201ENST00000384515 134 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 RNA5SP241-201ENST00000391326 114 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 RPL32P23-201ENST00000397237 405 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A1P12109 MTCO1P17-201ENST00000411522 491 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AL591848.1-201ENST00000413092 322 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 CYP4F29P-201ENST00000420685 446 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 RPL7P57-201ENST00000423238 740 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC012498.1-201ENST00000424037 437 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 TRIM60P10Y-201ENST00000425589 751 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 VTI1BP4-201ENST00000427516 527 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A1P12109 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.42□□□□□ -1.54
COL6A1P12109 RPS26P40-201ENST00000435209 294 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 TRIM60P8Y-201ENST00000436338 762 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A1P12109 AL662791.1-201ENST00000441992 928 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.42□□□□□ -1.54
COL6A1P12109 TDGF1P1-201ENST00000445734 527 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 SNORD42A-201ENST00000459584 64 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC010307.1-201ENST00000467206 836 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A1P12109 FAM92A1P2-202ENST00000504766 877 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC087276.1-201ENST00000529659 480 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A1P12109 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.42□□□□□ -1.54
COL6A1P12109 AC084783.1-201ENST00000565846 910 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.42□□□□□ -1.54
COL6A1P12109 VN1R79P-201ENST00000593540 513 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.42□□□□□ -1.54
COL6A1P12109 AC073091.2-201ENST00000603205 907 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC008945.2-201ENST00000606056 604 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC107214.2-201ENST00000608204 634 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC104458.1-201ENST00000608243 463 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 TUG1_1.1-201ENST00000610654 145 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC006338.1-201ENST00000618453 749 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC138649.3-201ENST00000622154 254 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AC008785.1-201ENST00000624475 456 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.42□□□□□ -1.54
COL6A1P12109 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.42□□□□□ -1.54
COL6A1P12109 LRRC77P-213ENST00000637727 880 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 AP002001.2-201ENST00000529025 1469 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 CDR1-202ENST00000625883 1485 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.42□□□□□ -1.54
COL6A1P12109 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.42□□□□□ -1.54
COL6A1P12109 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A1P12109 AL022311.1-201ENST00000623726 19416 ntBASIC5.42□□□□□ -1.54
COL6A1P12109 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL6A1P12109 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A1P12109 SAGE2P-201ENST00000420011 2126 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL6A1P12109 RNU1-64P-201ENST00000365443 163 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A1P12109 AC025750.1-201ENST00000399891 379 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 FGF7P8-201ENST00000402994 292 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC068533.2-201ENST00000411872 306 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC5.41□□□□□ -1.54
COL6A1P12109 UQCRBP1-201ENST00000421129 336 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC5.41□□□□□ -1.54
COL6A1P12109 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.41□□□□□ -1.54
COL6A1P12109 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.41□□□□□ -1.54
COL6A1P12109 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.41□□□□□ -1.54
COL6A1P12109 TRIM60P3Y-201ENST00000432201 673 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC5.41□□□□□ -1.54
COL6A1P12109 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A1P12109 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.41□□□□□ -1.54
COL6A1P12109 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.41□□□□□ -1.54
COL6A1P12109 MTCO1P48-201ENST00000448024 1096 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AL359073.1-201ENST00000448036 403 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AL162388.1-201ENST00000450912 352 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC108941.1-201ENST00000502853 530 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC011352.3-201ENST00000505162 593 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 SNX5P1-201ENST00000505757 1041 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms