Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC109315.1-201ENST00000584143 1347 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 ZNF29P-201ENST00000225587 168 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 RNU4-68P-201ENST00000364314 141 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 RN7SKP227-201ENST00000364445 330 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 SNORA72.3-201ENST00000365074 132 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 RNA5SP167-201ENST00000365461 116 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 RNU6-837P-201ENST00000391056 108 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AL022722.2-201ENST00000402519 180 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 RPL23AP48-201ENST00000406913 488 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 RPS23P10-201ENST00000416185 486 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC004975.1-201ENST00000428733 208 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 USP9YP31-201ENST00000431405 881 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 RPL21P133-201ENST00000443666 476 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC114755.5-201ENST00000447760 831 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 FGF7P3-201ENST00000454645 303 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 snoU13.3-201ENST00000459441 104 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 RPL5P24-201ENST00000463742 885 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC011979.1-201ENST00000472300 483 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC134050.1-201ENST00000495088 933 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 TRAV31-201ENST00000502780 342 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC093767.1-201ENST00000504523 156 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC020910.2-201ENST00000603635 610 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC106052.1-201ENST00000608029 497 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC073348.1-201ENST00000623002 331 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 UGP2-231ENST00000627474 264 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS28Q9UK41 Z82217.1-201ENST00000625157 8149 ntBASIC4.31□□□□□ -1.72
VPS28Q9UK41 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS28Q9UK41 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS28Q9UK41 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS28Q9UK41 GDI2P1-201ENST00000429312 1336 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 SNORD82-201ENST00000365530 70 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 RNU6-761P-201ENST00000384148 107 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 MTND4LP20-201ENST00000402379 270 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC244098.2-201ENST00000422068 99 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC092757.1-201ENST00000467293 467 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 RPS6P4-201ENST00000494693 758 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC078918.1-201ENST00000498515 228 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC114322.1-201ENST00000506771 926 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC010460.2-201ENST00000509054 677 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AP000619.3-201ENST00000535634 1127 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC125611.1-201ENST00000549563 229 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS28Q9UK41 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC006116.5-201ENST00000591936 559 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AL591034.3-201ENST00000605511 685 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC233309.1-201ENST00000619522 751 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC092184.1-201ENST00000625042 715 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS28Q9UK41 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
VPS28Q9UK41 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS28Q9UK41 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
VPS28Q9UK41 CDR1-202ENST00000625883 1485 ntBASIC4.3□□□□□ -1.72
VPS28Q9UK41 AC099786.3-201ENST00000565735 1410 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms