Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 DUXAP1-201ENST00000556632 463 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AGGF1P6-201ENST00000569213 976 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC074051.3-201ENST00000570238 358 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC091946.2-201ENST00000606105 291 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC012409.3-201ENST00000611343 981 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC005332.6-201ENST00000613178 446 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AP003485.2-201ENST00000623636 610 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 MFSD8-216ENST00000641147 4009 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC097504.1-201ENST00000515103 2415 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 OR4A15-201ENST00000314706 1035 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 RNU6-1243P-201ENST00000364028 107 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AL121978.1-201ENST00000402778 359 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AL450338.1-201ENST00000407987 512 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 AL050321.1-201ENST00000432363 400 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC087879.1-201ENST00000474343 374 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC087385.1-201ENST00000475062 312 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 RPS29P19-201ENST00000479709 171 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC006517.1-201ENST00000480485 328 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC013828.1-201ENST00000481845 158 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 ACTG1P13-201ENST00000486987 1043 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AF213884.1-201ENST00000488102 463 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC026979.1-201ENST00000492525 396 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC146944.2-203ENST00000502493 354 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC005351.1-201ENST00000511152 786 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC139495.1-202ENST00000513164 354 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC016065.2-201ENST00000514530 444 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 RNY4P37-201ENST00000516225 96 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 MTCYBP28-201ENST00000566728 1132 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC145350.1-201ENST00000567426 208 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC067852.4-201ENST00000590314 478 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC115286.1-201ENST00000604298 434 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AL356218.2-201ENST00000605264 187 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 ARF4P1-201ENST00000605447 541 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AP001521.1-201ENST00000609150 300 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AL450489.1-201ENST00000612071 468 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC006338.2-201ENST00000616864 791 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC121761.2-201ENST00000617300 689 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC091304.6-201ENST00000619761 202 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC025125.1-201ENST00000624743 1922 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 AC107982.1-201ENST00000507171 1300 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
NKX3-1Q99801 OR56B2P-202ENST00000641377 2453 ntBASIC3.63□□□□□ -1.83
NKX3-1Q99801 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.63□□□□□ -1.83
NKX3-1Q99801 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-1Q99801 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-1Q99801 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-1Q99801 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-1Q99801 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-1Q99801 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC119751.3-201ENST00000399720 670 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 NUP35P2-201ENST00000416748 943 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC011233.1-201ENST00000422812 283 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 EIF1P3-201ENST00000423841 334 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms