Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AL356095.1-201ENST00000417217 199 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RPL7P53-201ENST00000421245 739 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RPS12P5-201ENST00000423449 371 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 MTND3P1-201ENST00000441336 220 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 HMGB3P9-201ENST00000441799 583 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RPL7P31-201ENST00000450192 724 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AL121877.1-201ENST00000453704 622 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RPL7P15-201ENST00000461190 712 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RPL7P18-201ENST00000478965 734 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 GAPDHP36-201ENST00000480688 918 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RPS4XP18-201ENST00000495480 763 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC025445.1-201ENST00000502728 300 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC010587.2-201ENST00000511727 448 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC104057.1-201ENST00000515547 497 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RNA5SP154-201ENST00000516193 111 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AP000827.1-201ENST00000527814 258 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 MTND2P26-201ENST00000528255 1029 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC125611.1-201ENST00000549563 229 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AL389895.1-201ENST00000554127 252 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC002400.1-201ENST00000569310 726 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC067852.4-201ENST00000590314 478 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC068722.2-201ENST00000618734 544 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC120349.2-201ENST00000625002 298 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC068254.2-201ENST00000623938 3577 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 LARP1BP1-201ENST00000506036 1359 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 RNU6-1243P-201ENST00000364028 107 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC097374.1-203ENST00000400783 485 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 RNA5SP104-201ENST00000410989 118 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC068533.2-201ENST00000411872 306 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AL133384.1-201ENST00000412744 351 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 COX6CP15-201ENST00000426313 211 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 MTND2P20-201ENST00000440805 661 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 MTCO1P48-201ENST00000448024 1096 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 MTCO3P2-201ENST00000457365 171 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 RPS26P28-201ENST00000470806 348 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 RPL7P38-201ENST00000488396 739 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC110768.1-201ENST00000509222 400 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 PGBD4P4-201ENST00000509673 613 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 OR4A12P-201ENST00000530847 918 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 ZNF321P-202ENST00000550843 495 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AL161713.1-201ENST00000555538 145 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 RPL21P12-201ENST00000559810 515 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 MIR4504-201ENST00000577413 92 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC090312.1-201ENST00000580637 348 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 SNORD39.3-201ENST00000584451 71 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC107982.3-201ENST00000584957 985 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 SLC25A36P1-201ENST00000590111 465 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 RPL7P50-201ENST00000600588 727 ntBASIC4.25□□□□□ -1.73
COL28A1Q2UY09 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.25□□□□□ -1.73
COL28A1Q2UY09 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms