Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 MIR4716-201ENST00000579628 84 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 AC093765.1-201ENST00000603758 881 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 AC078899.5-201ENST00000612475 178 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AC091834.1-201ENST00000614543 472 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 OR5AK4P-201ENST00000635912 903 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AC073869.10-201ENST00000642016 354 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 DCAF13P1-201ENST00000495256 1330 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AC002525.1-201ENST00000624392 1622 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL049555.1-201ENST00000562834 1933 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXD3P31249 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 XPOTP1-201ENST00000443317 2398 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD3P31249 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 AL118496.1-201ENST00000440201 1812 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 OR11H4-201ENST00000315409 1082 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 RNVU1-6-201ENST00000364688 164 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 RNA5SP505-201ENST00000364748 108 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 RNU6-1283P-201ENST00000365314 105 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD3P31249 SNORA51.6-201ENST00000384151 125 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 SNORA70.10-201ENST00000384515 134 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 Y_RNA.554-201ENST00000384672 102 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 RPL21P67-201ENST00000402896 478 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 RPS16P5-201ENST00000406501 404 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 Y_RNA.598-201ENST00000410480 95 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AC022028.1-201ENST00000412054 408 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AL590139.1-201ENST00000416267 400 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 EIF1P1-201ENST00000421436 341 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXD3P31249 AL136231.1-201ENST00000429407 730 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC023347.2-201ENST00000433994 462 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXD3P31249 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD3P31249 RPS29P9-201ENST00000440360 171 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 RPL23AP16-201ENST00000441715 421 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD3P31249 TCEA1P1-201ENST00000449716 880 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AL590365.1-201ENST00000450788 243 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 PRPF38AP1-201ENST00000451976 933 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 OR6K1P-201ENST00000456766 971 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 MTCO1P42-201ENST00000457379 726 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 RPL7P22-201ENST00000466005 733 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AL136126.1-201ENST00000473603 402 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AP000893.1-201ENST00000474462 794 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 RN7SL319P-201ENST00000480656 221 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 LARP1BP2-201ENST00000486594 519 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 HMGB1P36-201ENST00000487709 576 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AC108941.1-201ENST00000502853 530 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 FTH1P24-201ENST00000503502 462 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC093809.1-201ENST00000509155 340 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AF186190.1-201ENST00000517470 480 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 PAICSP4-201ENST00000517543 1253 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXD3P31249 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC008127.2-201ENST00000549925 1075 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXD3P31249 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC3.86□□□□□ -1.79
HOXD3P31249 TPRKBP2-201ENST00000565969 475 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC137800.2-201ENST00000574375 120 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 MIR4504-201ENST00000577413 92 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXD3P31249 AC022916.3-201ENST00000592961 742 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 BNIP3P8-201ENST00000597863 560 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 BCRP9-201ENST00000605312 388 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AL355073.2-201ENST00000612106 557 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AC008250.2-201ENST00000615261 205 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AC123768.4-201ENST00000616244 701 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXD3P31249 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
HOXD3P31249 OR5H6-203ENST00000642105 978 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
HOXD3P31249 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXD3P31249 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXD3P31249 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms