Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXD4P09016 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 AC095057.3-201ENST00000567102 1157 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC023824.3-201ENST00000569003 562 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC107982.3-201ENST00000584957 985 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC125494.3-201ENST00000602759 455 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXD4P09016 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 AL121895.2-201ENST00000619558 447 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC000123.2-201ENST00000623124 461 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC017104.5-201ENST00000637647 639 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 BX649567.1-201ENST00000642071 1134 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC099786.3-201ENST00000565735 1410 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD4P09016 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD4P09016 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD4P09016 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC073055.1-201ENST00000456901 1621 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD4P09016 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD4P09016 AL049737.1-201ENST00000413920 1403 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD4P09016 ANKRD36P1-201ENST00000344424 659 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 RNU6-224P-201ENST00000384055 107 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 Y_RNA.472-201ENST00000384322 102 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 MIR513B-201ENST00000385136 84 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD4P09016 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 RPL30P2-201ENST00000414021 291 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 OR5BE1P-201ENST00000425977 939 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 MTCO1P54-201ENST00000430139 712 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD4P09016 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 RPS26P30-201ENST00000443431 335 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AC068135.1-201ENST00000446164 246 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 CDC42P1-201ENST00000456658 548 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
HOXD4P09016 RPL30P11-201ENST00000495304 339 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AC108145.1-201ENST00000503770 153 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD4P09016 PRELID3BP4-201ENST00000515476 571 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 PAICSP4-201ENST00000517543 1253 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD4P09016 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD4P09016 AC025627.2-201ENST00000576220 160 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 MIR5684-201ENST00000585074 65 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 PCNAP1-202ENST00000595299 752 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 GAS5-AS1-201ENST00000602767 694 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD4P09016 AL355493.4-201ENST00000618530 292 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AC010975.3-201ENST00000618727 978 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AC011330.2-201ENST00000621680 635 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AC024595.1-201ENST00000623088 387 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD4P09016 OR5BE1P-202ENST00000641168 1176 ntBASIC3.65□□□□□ -1.83
HOXD4P09016 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD4P09016 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD4P09016 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HOXD4P09016 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD4P09016 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD4P09016 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD4P09016 MIR208A-201ENST00000362287 71 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 SNORD46.1-201ENST00000364139 104 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 SNORD116-12-201ENST00000384468 92 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 RNU6-1242P-201ENST00000391052 103 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AL590704.1-201ENST00000402856 794 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 CRYBB2P1-203ENST00000415709 538 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AC234782.4-201ENST00000417646 1048 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 RPS3AP37-201ENST00000419176 745 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AC005005.2-201ENST00000420779 380 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AL691449.1-201ENST00000426570 421 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AL445584.1-201ENST00000431451 330 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD4P09016 GOT2P5-201ENST00000433995 546 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD4P09016 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD4P09016 CR769776.1-201ENST00000441254 787 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 Z73417.1-201ENST00000447373 778 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms