Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXA3O43365 AK3P4-201ENST00000504283 583 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA3O43365 RFPL4AP5-201ENST00000514977 504 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 Y_RNA.675-201ENST00000516389 149 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA3O43365 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 PDCD5P1-201ENST00000543528 309 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC125611.2-201ENST00000551907 647 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC063949.1-201ENST00000552900 865 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC007424.1-203ENST00000554613 687 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC018638.8-201ENST00000588755 281 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC008782.1-201ENST00000603386 430 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AL022394.1-201ENST00000606979 292 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 AL118522.2-201ENST00000616045 615 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC037198.3-201ENST00000616754 526 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 MVP-219ENST00000629059 120 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC005224.3-201ENST00000584683 2140 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC114546.3-201ENST00000623582 1734 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
HOXA3O43365 RNA5SP258-201ENST00000362750 119 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 RNU6-223P-201ENST00000362830 107 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 RNU6-97P-201ENST00000363387 104 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 RN7SKP6-201ENST00000364795 319 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 AC092832.1-201ENST00000422934 400 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 RPL23AP30-201ENST00000432419 501 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 NOP56P2-201ENST00000447491 769 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AL118496.2-201ENST00000448300 230 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 SLC25A18P1-201ENST00000449385 454 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
HOXA3O43365 AC008953.1-201ENST00000497334 318 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 MTND6P2-201ENST00000512226 524 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXA3O43365 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 SNORA40.12-201ENST00000516329 111 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 RNA5SP337-201ENST00000517007 109 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AC078899.1-201ENST00000521432 1185 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXA3O43365 AP003497.1-201ENST00000528472 562 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AC092470.1-201ENST00000546187 132 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AC068993.1-201ENST00000546724 589 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.48□□□□□ -1.69
HOXA3O43365 SETP2-201ENST00000553886 926 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.48□□□□□ -1.69
HOXA3O43365 HMGB1P6-201ENST00000569046 646 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXA3O43365 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXA3O43365 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 MIR4311-201ENST00000580794 100 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.48□□□□□ -1.69
HOXA3O43365 AC068790.3-201ENST00000602988 553 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 RPSAP73-201ENST00000614820 330 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AL049794.2-201ENST00000616301 365 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AL596245.1-201ENST00000618994 362 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXA3O43365 AC022106.2-201ENST00000620114 757 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXA3O43365 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXA3O43365 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.48□□□□□ -1.69
HOXA3O43365 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HOXA3O43365 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HOXA3O43365 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA3O43365 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms