Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 snoZ40.1-201ENST00000364540 72 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 SNORD116.1-201ENST00000365628 92 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 OR1L1-202ENST00000373686 1083 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 RNU6-413P-201ENST00000384115 107 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 RNU6-575P-201ENST00000411326 105 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AL008987.1-201ENST00000415528 237 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 HMGB3P20-201ENST00000417997 600 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AL009174.1-201ENST00000426577 416 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 RPS6P15-201ENST00000431996 751 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 MRPL42P4-201ENST00000453267 443 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 MTCO3P16-201ENST00000454456 754 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC005229.2-201ENST00000456995 399 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC093853.1-201ENST00000515689 483 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 OR8R1P-201ENST00000543943 764 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 CYCSP30-201ENST00000546447 172 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 DUXAP6-201ENST00000553858 601 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC005412.1-201ENST00000580812 1049 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC021749.1-201ENST00000604322 607 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC099676.1-201ENST00000608886 657 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AP005137.2-201ENST00000609238 400 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AP002967.1-201ENST00000624203 539 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC079416.3-201ENST00000624479 549 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 AC087821.2-201ENST00000637086 450 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 MFSD8-245ENST00000641743 948 ntBASIC3.99□□□□□ -1.77
SIX2Q9NPC8 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SIX2Q9NPC8 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 NACA3P-201ENST00000359690 648 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 RNU6-707P-201ENST00000364647 95 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AL590084.1-201ENST00000407885 387 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC002075.2-201ENST00000425207 252 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AL591419.1-201ENST00000427423 339 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 RPS7P5-201ENST00000441482 581 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 TPTE2P6-202ENST00000445572 1007 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 MTCO3P20-201ENST00000454926 688 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC099560.2-201ENST00000457554 255 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 RN7SL385P-201ENST00000468873 276 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 MTND2P14-201ENST00000482139 351 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC005912.1-201ENST00000495392 255 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC084024.2-201ENST00000503480 791 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 OR5AP1P-201ENST00000529730 940 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 ZNF321P-202ENST00000550843 495 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC023161.2-201ENST00000551218 780 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC090312.2-201ENST00000582687 378 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 BNIP3P24-201ENST00000593398 557 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AC021171.1-201ENST00000603137 706 ntBASIC3.98□□□□□ -1.77
SIX2Q9NPC8 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SIX2Q9NPC8 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms