Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL590004.1-201ENST00000405321 300 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 RNU2-9P-201ENST00000410194 145 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL807761.1-201ENST00000417622 171 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC079355.1-201ENST00000421770 223 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC007283.2-201ENST00000424739 197 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC005534.2-201ENST00000431047 433 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL365400.1-201ENST00000431854 640 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 OR6D1P-201ENST00000436165 939 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL049734.2-201ENST00000441066 616 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC018638.3-201ENST00000461273 132 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 RPS27AP17-201ENST00000463344 455 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 RPS3AP50-201ENST00000487064 803 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 snoU109.6-201ENST00000516831 118 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AP003072.2-201ENST00000527756 676 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 HAUS8P1-201ENST00000549005 542 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC022432.1-201ENST00000595739 310 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL161729.3-201ENST00000603533 673 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL355472.4-201ENST00000610233 626 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AL160413.1-201ENST00000622780 310 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC000123.2-201ENST00000623124 461 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 AC019278.1-201ENST00000623516 479 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 CYP3A51P-201ENST00000633513 256 ntBASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.21□□□□□ -1.58
PTCHD1Q96NR3 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC010266.2-201ENST00000564741 3255 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 MTCO1P11-201ENST00000429111 1528 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 RNU6-1097P-201ENST00000363586 107 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 SNORA51.2-201ENST00000364595 132 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 RNA5SP132-201ENST00000364725 118 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AL354719.1-201ENST00000406535 843 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 ELOCP4-201ENST00000420090 333 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 UQCRBP1-201ENST00000421129 336 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AL354766.1-201ENST00000423396 542 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC006548.1-201ENST00000427470 102 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 RPL36AP53-201ENST00000432891 316 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 GPR143P-201ENST00000434155 205 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 RPS15AP9-201ENST00000439856 381 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 FHP1-201ENST00000442741 703 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 MTND4P19-201ENST00000446659 478 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 MTND1P18-201ENST00000448191 573 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AL354710.1-201ENST00000453641 246 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC100832.1-201ENST00000471945 383 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 RPS4XP14-201ENST00000493072 781 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC005726.1-201ENST00000494679 427 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 PCBP2P3-201ENST00000509726 843 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 RNU6-1220P-201ENST00000517126 108 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC105029.1-201ENST00000520250 669 ntBASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD1Q96NR3 AC122688.1-201ENST00000541494 223 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms