Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL591473.1-201ENST00000464297 313 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 RN7SL354P-201ENST00000469282 294 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC116347.2-201ENST00000514912 523 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 RNU1-6P-201ENST00000516290 144 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 HSPA8P13-201ENST00000523715 472 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC068587.4-201ENST00000533893 186 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC022880.1-201ENST00000534017 973 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC233702.9-201ENST00000581528 203 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC087683.1-201ENST00000591187 441 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC012065.4-201ENST00000602445 679 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 DEFB131E-202ENST00000602581 683 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC115286.1-201ENST00000604298 434 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC112187.2-201ENST00000604345 283 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC004492.1-201ENST00000607036 742 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AL136164.3-201ENST00000624429 3978 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 AC010928.1-201ENST00000592477 1447 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 PABPC1P9-201ENST00000426076 1612 ntBASIC4.61□□□□□ -1.67
PTCHD3Q3KNS1 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 MAPK10-320ENST00000641462 6696 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC097504.1-201ENST00000515103 2415 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 RNU1-83P-201ENST00000363426 164 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 RNA5SP391-201ENST00000363456 119 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AL590762.2-201ENST00000395798 571 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AL080315.1-201ENST00000406055 466 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 VN1R8P-201ENST00000407739 893 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AL023807.1-201ENST00000407932 359 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC016397.1-201ENST00000412463 242 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC069213.2-201ENST00000420238 366 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AL389915.1-201ENST00000422463 466 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 NRBF2P3-201ENST00000432731 865 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 SNRPEP7-201ENST00000438350 220 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 EEF1E1P1-201ENST00000446998 430 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 CYCSP34-201ENST00000458172 304 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 APOOP2-201ENST00000461561 539 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC091564.1-201ENST00000464563 479 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC011005.3-201ENST00000491624 395 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 ARL2BPP4-201ENST00000506854 471 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC093809.1-201ENST00000509155 340 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 GSTP1P1-201ENST00000548078 319 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC091489.2-201ENST00000566263 604 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 ELOCP28-201ENST00000590044 317 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC234771.5-201ENST00000600161 514 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 BNIP3P11-201ENST00000603878 563 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC008745.1-201ENST00000604064 271 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 HSPE1P14-201ENST00000605812 302 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AC087241.4-201ENST00000612441 480 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 MIR6780A-201ENST00000615089 68 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 MIR6853-201ENST00000619642 74 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AL031119.1-201ENST00000404707 1879 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AL442639.1-201ENST00000625030 1899 ntBASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD3Q3KNS1 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms