Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Ushbp1Q8R370 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Gm11355-201ENSMUST00000121120 306 ntBASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Gm44771-201ENSMUST00000206975 626 ntBASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ushbp1Q8R370 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Phf7-203ENSMUST00000226565 1971 ntBASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ushbp1Q8R370 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ushbp1Q8R370 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ushbp1Q8R370 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ushbp1Q8R370 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Ushbp1Q8R370 Actl10-202ENSMUST00000226583 1501 ntBASIC18.39■□□□□ 0.54
Ushbp1Q8R370 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms